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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|575604.3.peg.967: Lactobacillus gasseri SV-16A-US

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NCBI Taxonomy Id: 575604

Current Assignment: Lj928 prophage protein
Translate Function Assignments


Context on contig ADDY01000015 from base 117963 to 129190 (11228 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
956 118460 117963 498 -           hypothetical protein  
957 118667 118476 192 - 15         hypothetical protein  
958 118824 118690 135 - 22         FIG00754532: hypothetical protein  
959 119020 118883 138 - 58         hypothetical protein  
960 119562 119101 462 - 80         Holliday junction resolvase  
961 119720 119559 162 - -4         hypothetical protein  
962 120306 120037 270 - 316         hypothetical protein  
963 120710 120324 387 - 17         Lj928 prophage protein  
964 121510 121208 303 - 497         hypothetical protein  
965 122364 121774 591 - 263         Lj965 prophage replication protein  
966 122336 122494 159 + -29         hypothetical protein  
967 123289 122486 804 - -9         Lj928 prophage protein  
968 124182 123292 891 - 2         Lj928 prophage replication protein  
969 124365 124213 153 - 30         Lj928 prophage recombination protein  
970 124797 124513 285 - 147         hypothetical protein  
971 125599 124811 789 - 13         Phage antirepressor protein  
972 125839 125612 228 - 12         hypothetical protein  
973 125989 126597 609 + 149         SOS-response repressor and protease LexA (EC 3.4.21.88)  
974 126608 127201 594 + 10         hypothetical protein  
975 127226 127879 654 + 24         Phage protein  
976 128066 129190 1125 + 186         putative integrase  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.967 Lj928 prophage protein
MEIYGREEDRAKWAMHYAQVKANISQPKRTHNVTVSGKNKQGKPYSYDYKYADLADIDKA
VMDGIKKATDKEGNVTFSYFFDIQTTNTAVAVQTLLVDASGFTVKTNKIVFQNGKAYDAQ
ATASLISYAKRYSLSGAFGIAADDDNDVQDQKTIYEPKILTKQELENYQVYYNGVQANLY
DLYQEARDGIKDAQDWFKESHTPEDAQAIHQIAQIFKKKHPGTKESDKAKKAALDKIQQS
RPEENKKDPFAKKKVASESDPDVDSLF

MD5 = bb834e58ee9038de6fa808dbacf54b10


  DNA Sequence

>fig|575604.3.peg.967 Lj928 prophage protein
atggaaatttatggaagagaagaagatagagctaagtgggcaatgcattacgcacaagtg
aaggctaatattagccagcctaaaagaacacataatgttactgtttcaggcaaaaacaaa
caaggaaaaccttatagctatgactataagtatgccgatctagcagacattgataaagca
gtaatggatggtattaaaaaagctacagataaagaaggtaatgtaacttttagttatttc
ttcgatattcaaacaactaacactgcagtagccgtccaaacacttttagttgatgcctca
ggctttactgtcaaaacaaataaaatcgtttttcaaaacggtaaagcatatgatgcacaa
gcaaccgccagtcttatcagttatgcaaaaagatattcacttagtggagcctttgggatt
gctgcagacgatgataatgacgtacaagatcaaaagactatctatgaacctaaaatctta
accaagcaggaactcgaaaattatcaggtgtattacaatggcgttcaagctaacttgtat
gacttatatcaagaagcaagagatggtatcaaagacgcgcaggattggtttaaagagtca
catacaccagaagatgcgcaagctatccatcaaattgcacagatttttaaaaagaaacac
cccggaacaaaagaatctgataaagcaaagaaagctgctcttgataagatacagcagtct
cgacccgaagaaaacaaaaaggatccgtttgctaaaaagaaagtagcaagtgagagcgat
cccgatgtagatagtttattttag


  DNA with Flanking Sequence

>fig|575604.3.peg.967 Lj928 prophage protein
cttggtgagattgctacagagtacggagtagcccttcaaaaattagaatacaaccctaag
tgggataacaagtccacttcttggaacactattgaagaagaagctagacagcaatttgag
gctattcttgaacaagaaaaagccagaaaagaagctgaacaagttattgctaataaggct
aatgaatacactaagctcgctatgaccgcaagtccttatttacagatgcttgattataag
tcactgcctgacgttcttactcaaatggataatgaccatgaatatttaattaagcaggct
aaacagcaagaagaaaatcgtaagaaagctatagaatcgcttgaacaacatggcgataag
tatgttgatgccaaaacaggtgaagtagttgataaggtacatagcgtcacacttaaactt
actggcaccacagaacaattaacggccctatctaacttcatccacgattggggtattagc
tatgaaagggtgaactaagcatggaaatttatggaagagaagaagatagagctaagtggg
caatgcattacgcacaagtgaaggctaatattagccagcctaaaagaacacataatgtta
ctgtttcaggcaaaaacaaacaaggaaaaccttatagctatgactataagtatgccgatc
tagcagacattgataaagcagtaatggatggtattaaaaaagctacagataaagaaggta
atgtaacttttagttatttcttcgatattcaaacaactaacactgcagtagccgtccaaa
cacttttagttgatgcctcaggctttactgtcaaaacaaataaaatcgtttttcaaaacg
gtaaagcatatgatgcacaagcaaccgccagtcttatcagttatgcaaaaagatattcac
ttagtggagcctttgggattgctgcagacgatgataatgacgtacaagatcaaaagacta
tctatgaacctaaaatcttaaccaagcaggaactcgaaaattatcaggtgtattacaatg
gcgttcaagctaacttgtatgacttatatcaagaagcaagagatggtatcaaagacgcgc
aggattggtttaaagagtcacatacaccagaagatgcgcaagctatccatcaaattgcac
agatttttaaaaagaaacaccccggaacaaaagaatctgataaagcaaagaaagctgctc
ttgataagatacagcagtctcgacccgaagaaaacaaaaaggatccgtttgctaaaaaga
aagtagcaagtgagagcgatcccgatgtagatagtttattttaggtgatgagcaatggaa
tttacaggatcaagagcattcttaaacataccagttgcagctgctagagatgaaaaatta
ctaaaatatcctaaatctatcattctcttaggtgaaatcgtatcgatgttaaatgttacg
ggtgaatttttcatgagtaacagcacgctggccaaacgattacactgtgataggaaaact
gttattaattatataaatcttctcgaaaaagaaggatatataaatagaaaaatagttaaa
gactcacaaaatggagcaattaaaggcagaataatctcagcgggcgacaccctagtgaaa
tctgcttcactagggtggtgttctccatttcaccaggatagtgaacagaaattcacgggg
gtagtgaaacagcgttcacctaaagagaacaagttaaaagaacatcataatagatcaatt
aataaatctctctctaaagaagagagggagagagatgcaaatgcaattgaaatcctaatt
acgt


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  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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