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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|575604.3.peg.960: Lactobacillus gasseri SV-16A-US

This feature in The SEED Viewer

NCBI Taxonomy Id: 575604

Current Assignment: Holliday junction resolvase
Translate Function Assignments


Context on contig ADDY01000015 from base 113865 to 124797 (10933 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
950 114542 113865 678 -           FIG00746678: hypothetical protein  
951 114695 114558 138 - 15         hypothetical protein  
952 115409 114696 714 - 0         ParB domain protein nuclease  
953 115909 115412 498 - 2         hypothetical protein  
954 116574 115921 654 - 11         FIG00742244: hypothetical protein  
955 116982 116614 369 - 39         hypothetical protein  
rna.14 117186 117112 75 - 129         tRNA-Phe-GAA  
956 118460 117963 498 - 776         hypothetical protein  
957 118667 118476 192 - 15         hypothetical protein  
958 118824 118690 135 - 22         FIG00754532: hypothetical protein  
959 119020 118883 138 - 58         hypothetical protein  
960 119562 119101 462 - 80         Holliday junction resolvase  
961 119720 119559 162 - -4         hypothetical protein  
962 120306 120037 270 - 316         hypothetical protein  
963 120710 120324 387 - 17         Lj928 prophage protein  
964 121510 121208 303 - 497         hypothetical protein  
965 122364 121774 591 - 263         Lj965 prophage replication protein  
966 122336 122494 159 + -29         hypothetical protein  
967 123289 122486 804 - -9         Lj928 prophage protein  
968 124182 123292 891 - 2         Lj928 prophage replication protein  
969 124365 124213 153 - 30         Lj928 prophage recombination protein  
970 124797 124513 285 - 147         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.960 Holliday junction resolvase
MRVNFTIEGPPVGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGVFDKDEPLDVKII
AYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMKRDKRLHKMIEVMRG
VYHDDKQVTTLLVKKRYAERPRVEVRIKRDMGD

MD5 = b65b3d6a1846688b559a075ef7fa6f4b


  DNA Sequence

>fig|575604.3.peg.960 Holliday junction resolvase
ttgagagttaactttacgattgaaggaccgccagtaggcaaggcaagaccgagagttact
agaacggtaacttacacgccagctaaaacggcacgatatgaggatttagttaggtataca
gctattaatagtttcaaaggcgtatttgataaggacgagccattagacgtcaaaatcata
gcatattttgaagttccaaagagtttaagcaagaagcgtaaggctttatgtttggctaac
caagaattgcctactaagaagcctgatgctgataacgtgggcaagatcatcatggacggc
atgaacccaaagatgaaacgtgataaacgacttcacaaaatgattgaggttatgagaggt
gtttaccacgatgacaagcaggtaacaactttgctagttaaaaagaggtatgccgaacgt
cctagggttgaagtgagaattaagagagatatgggtgattag


  DNA with Flanking Sequence

>fig|575604.3.peg.960 Holliday junction resolvase
taaacgcaaagctggtgatcgaatgatgactaaacaacaagaaaaatgcccatattgtaa
gggcgtaaaaagaattagaaatgatctagttcattatactttcagacatatcgtcaaaat
tcaaaatggtaatgaattatggtcaatagtgattactaataaccatgaatataaaaccat
ggcttatattgaatactgccctaaatgtgggaggaagctatgaagcaattattacttacg
aagtttaattgaggataaagtagcatgtcagattgggtttttgcagcagcattcttagtt
ctgctagctatagttattttggtggtaggagcgatgtaagacatggaacaaatttcagaa
aatacctattttttaaatccagaaaaatggcaaaacatagctaacataattggtggttta
gagatttgcgatagtgaaacaggctggcctattggtgtgcttaaacctgctggaattgaa
tattatgaggatattgacgattgagagttaactttacgattgaaggaccgccagtaggca
aggcaagaccgagagttactagaacggtaacttacacgccagctaaaacggcacgatatg
aggatttagttaggtatacagctattaatagtttcaaaggcgtatttgataaggacgagc
cattagacgtcaaaatcatagcatattttgaagttccaaagagtttaagcaagaagcgta
aggctttatgtttggctaaccaagaattgcctactaagaagcctgatgctgataacgtgg
gcaagatcatcatggacggcatgaacccaaagatgaaacgtgataaacgacttcacaaaa
tgattgaggttatgagaggtgtttaccacgatgacaagcaggtaacaactttgctagtta
aaaagaggtatgccgaacgtcctagggttgaagtgagaattaagagagatatgggtgatt
agatgaagcatagcgcagaagtaatcgctgcagcagtaatgctaatttgcctaggagcag
ttggatttgtggtgtttgtactatgagtgatcttaagtatcaaaaaggcgaatggtatca
cgtacaggaagacggaacacttaagcctgtagactatgacaaagaagtaaaagaatatta
caagaagtggattgataactatgaaattgtacggatatgaagtcaacacttgcaattata
agaagttttcaacaggacaacttgatgagtttagatcaatgttgaaatcgaatattagaa
attttaatgaacttgttgaaccaacaattgaagcaatgattgatgaagacaaggcagaag
agttactagcttatatagaaagtgaaatcaaagtaagagacagaaataattgataagtga
gaggaaggatcagtaatgaataatgattataggcgctatcacttagcgcatgatgaagcg
tataagagcttaaatttgatcc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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