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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|575604.3.peg.952: Lactobacillus gasseri SV-16A-US

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NCBI Taxonomy Id: 575604

Current Assignment: ParB domain protein nuclease
Translate Function Assignments


Context on contig ADDY01000015 from base 109125 to 120710 (11586 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
946 109754 109125 630 -           Phage capsid scaffolding protein  
947 110817 109849 969 - 94         Phage minor capsid protein  
948 112579 110945 1635 - 127         minor capsid protein  
949 113899 112592 1308 - 12         Terminase large subunit [Bacteriophage A118]  
950 114542 113865 678 - -35         FIG00746678: hypothetical protein  
951 114695 114558 138 - 15         hypothetical protein  
952 115409 114696 714 - 0         ParB domain protein nuclease  
953 115909 115412 498 - 2         hypothetical protein  
954 116574 115921 654 - 11         FIG00742244: hypothetical protein  
955 116982 116614 369 - 39         hypothetical protein  
rna.14 117186 117112 75 - 129         tRNA-Phe-GAA  
956 118460 117963 498 - 776         hypothetical protein  
957 118667 118476 192 - 15         hypothetical protein  
958 118824 118690 135 - 22         FIG00754532: hypothetical protein  
959 119020 118883 138 - 58         hypothetical protein  
960 119562 119101 462 - 80         Holliday junction resolvase  
961 119720 119559 162 - -4         hypothetical protein  
962 120306 120037 270 - 316         hypothetical protein  
963 120710 120324 387 - 17         Lj928 prophage protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
MSKSLQQFEYGTVKRSKIKFADYNPRIIDETNQKKLVKAIRENGLIEPLVWNKRTGVLVG
GHQRLTAADKIYRKKDYDVPVAIIDVDEKTEKKLNVQLNNPSMQGDWDLDELFNLSKDVS
FEDMGFNKSDIDFMFDGDVDFDGSLSENDEPSKTSTPYDDEVEDEKDKMTKLAEFNQTKS
EFRKKENDSTIINFYTKVIFPSNEAKEEFYKKANIPANEEFITFDQLKRYFKKKYVS

MD5 = 04aa267fe9f008aec980f5379ffee48d


  DNA Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
atgtctaaatcattgcagcaatttgaatatggaacagttaaacgcagcaaaattaaattc
gctgattataatcctagaattattgatgagactaaccaaaagaaacttgttaaagcaatt
agagaaaatggattaattgaaccactagtatggaataaacgtactggtgtgcttgttggt
ggtcatcaacgtttaactgctgcagataagatttatcgtaaaaaagattatgatgttcca
gtagcaatcattgacgttgacgaaaagacggaaaagaaattaaacgtccaacttaacaat
ccaagtatgcaaggcgattgggatttagacgaactctttaatttatcaaaagatgtatct
tttgaagacatgggtttcaataagtctgatattgatttcatgtttgatggggatgttgat
tttgatggtagtttgtcagaaaacgatgaaccatctaagacatcaacaccttacgatgat
gaggttgaagatgagaaagataagatgactaaacttgctgaatttaatcagactaaaagt
gagtttagaaagaaagaaaatgattcaaccatcattaatttttatacaaaagtaatcttt
cctagtaatgaagcaaaagaagagttttacaagaaagcaaacattccagctaatgaagag
tttatcacgtttgaccagttaaaacggtattttaagaagaagtatgtgagttaa


  DNA with Flanking Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
atggctaaagaactaaaactaaatactttcgcagattatgttgctaatgcacgttatatt
cctttaaacgatcggcaaaaaagagctagagctaaagaagaaaaagcacgaaagaagaga
atagctgatcggacaaaggaagttcgaaggatgaaatatacttctaaagaaaggcaagct
tatttaaaagctttacgttacggtcgtagacaaaaagctggtggagaatttaaggcggtt
cctaaggtcaaatttaatggtggaagcttaggagtaatgaaagatggcaacggtgttgtt
agagtgattgctaatcacccagagaaaggtatggttactattctaggtcctagaggtcca
aaagatgcaacaaattttagtacagtagctgtttctactagccatggctcaaaggctgca
aaaatgattaaaagtgcattagcaagcgttagcaaaggtaaatataaactgggctcaact
ggcagtagaggaggttagttatgtctaaatcattgcagcaatttgaatatggaacagtta
aacgcagcaaaattaaattcgctgattataatcctagaattattgatgagactaaccaaa
agaaacttgttaaagcaattagagaaaatggattaattgaaccactagtatggaataaac
gtactggtgtgcttgttggtggtcatcaacgtttaactgctgcagataagatttatcgta
aaaaagattatgatgttccagtagcaatcattgacgttgacgaaaagacggaaaagaaat
taaacgtccaacttaacaatccaagtatgcaaggcgattgggatttagacgaactcttta
atttatcaaaagatgtatcttttgaagacatgggtttcaataagtctgatattgatttca
tgtttgatggggatgttgattttgatggtagtttgtcagaaaacgatgaaccatctaaga
catcaacaccttacgatgatgaggttgaagatgagaaagataagatgactaaacttgctg
aatttaatcagactaaaagtgagtttagaaagaaagaaaatgattcaaccatcattaatt
tttatacaaaagtaatctttcctagtaatgaagcaaaagaagagttttacaagaaagcaa
acattccagctaatgaagagtttatcacgtttgaccagttaaaacggtattttaagaaga
agtatgtgagttaaatggcgagattaacatctaatgaaagagcattttttagattagctg
cacagcaacgacagcaaagaagaatggcaaacaacaatagagcaaaaagagtagtaagaa
aacgagcttcaactgggcatagtggtggatagcaaaggaatggttagatggcaagagcta
agtacaaacgatggctagagcctgataatctaaaaagaattagtgattgggctagaaatg
gtgtttcagagccacacatagccactgataaggataaaatggatatttcatattccacat
taaaagagtggaaaaacaaatatccggctatttcggccgccctaaaaaagaataaggaca
ttgttgatgctgaagtcgaagaatcttttgtttcgacaatgaaaaagcacaccctcacga
ccattcagtacaaaatggtcaagaaagataaatttgtgctgcaaggtgaacgacaaaagt
tcatgaatatgtataaaatggatcatcctaatgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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