The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|575604.3.peg.952: Lactobacillus gasseri SV-16A-US

This feature in The SEED Viewer

NCBI Taxonomy Id: 575604

Current Assignment: ParB domain protein nuclease
Translate Function Assignments



Context on contig ADDY01000015 from base 109125 to 120710 (11586 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
946 109754 109125 630 -           Phage capsid scaffolding protein  
947 110817 109849 969 - 94         Phage minor capsid protein  
948 112579 110945 1635 - 127         minor capsid protein  
949 113899 112592 1308 - 12         Terminase large subunit [Bacteriophage A118]  
950 114542 113865 678 - -35         FIG00746678: hypothetical protein  
951 114695 114558 138 - 15         hypothetical protein  
952 115409 114696 714 - 0         ParB domain protein nuclease  
953 115909 115412 498 - 2         hypothetical protein  
954 116574 115921 654 - 11         FIG00742244: hypothetical protein  
955 116982 116614 369 - 39         hypothetical protein  
rna.14 117186 117112 75 - 129         tRNA-Phe-GAA  
956 118460 117963 498 - 776         hypothetical protein  
957 118667 118476 192 - 15         hypothetical protein  
958 118824 118690 135 - 22         FIG00754532: hypothetical protein  
959 119020 118883 138 - 58         hypothetical protein  
960 119562 119101 462 - 80         Holliday junction resolvase  
961 119720 119559 162 - -4         hypothetical protein  
962 120306 120037 270 - 316         hypothetical protein  
963 120710 120324 387 - 17         Lj928 prophage protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
MSKSLQQFEYGTVKRSKIKFADYNPRIIDETNQKKLVKAIRENGLIEPLVWNKRTGVLVG
GHQRLTAADKIYRKKDYDVPVAIIDVDEKTEKKLNVQLNNPSMQGDWDLDELFNLSKDVS
FEDMGFNKSDIDFMFDGDVDFDGSLSENDEPSKTSTPYDDEVEDEKDKMTKLAEFNQTKS
EFRKKENDSTIINFYTKVIFPSNEAKEEFYKKANIPANEEFITFDQLKRYFKKKYVS

MD5 = 04aa267fe9f008aec980f5379ffee48d


  DNA Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
atgtctaaatcattgcagcaatttgaatatggaacagttaaacgcagcaaaattaaattc
gctgattataatcctagaattattgatgagactaaccaaaagaaacttgttaaagcaatt
agagaaaatggattaattgaaccactagtatggaataaacgtactggtgtgcttgttggt
ggtcatcaacgtttaactgctgcagataagatttatcgtaaaaaagattatgatgttcca
gtagcaatcattgacgttgacgaaaagacggaaaagaaattaaacgtccaacttaacaat
ccaagtatgcaaggcgattgggatttagacgaactctttaatttatcaaaagatgtatct
tttgaagacatgggtttcaataagtctgatattgatttcatgtttgatggggatgttgat
tttgatggtagtttgtcagaaaacgatgaaccatctaagacatcaacaccttacgatgat
gaggttgaagatgagaaagataagatgactaaacttgctgaatttaatcagactaaaagt
gagtttagaaagaaagaaaatgattcaaccatcattaatttttatacaaaagtaatcttt
cctagtaatgaagcaaaagaagagttttacaagaaagcaaacattccagctaatgaagag
tttatcacgtttgaccagttaaaacggtattttaagaagaagtatgtgagttaa


  DNA with Flanking Sequence

>fig|575604.3.peg.952 ParB domain protein nuclease
atggctaaagaactaaaactaaatactttcgcagattatgttgctaatgcacgttatatt
cctttaaacgatcggcaaaaaagagctagagctaaagaagaaaaagcacgaaagaagaga
atagctgatcggacaaaggaagttcgaaggatgaaatatacttctaaagaaaggcaagct
tatttaaaagctttacgttacggtcgtagacaaaaagctggtggagaatttaaggcggtt
cctaaggtcaaatttaatggtggaagcttaggagtaatgaaagatggcaacggtgttgtt
agagtgattgctaatcacccagagaaaggtatggttactattctaggtcctagaggtcca
aaagatgcaacaaattttagtacagtagctgtttctactagccatggctcaaaggctgca
aaaatgattaaaagtgcattagcaagcgttagcaaaggtaaatataaactgggctcaact
ggcagtagaggaggttagttatgtctaaatcattgcagcaatttgaatatggaacagtta
aacgcagcaaaattaaattcgctgattataatcctagaattattgatgagactaaccaaa
agaaacttgttaaagcaattagagaaaatggattaattgaaccactagtatggaataaac
gtactggtgtgcttgttggtggtcatcaacgtttaactgctgcagataagatttatcgta
aaaaagattatgatgttccagtagcaatcattgacgttgacgaaaagacggaaaagaaat
taaacgtccaacttaacaatccaagtatgcaaggcgattgggatttagacgaactcttta
atttatcaaaagatgtatcttttgaagacatgggtttcaataagtctgatattgatttca
tgtttgatggggatgttgattttgatggtagtttgtcagaaaacgatgaaccatctaaga
catcaacaccttacgatgatgaggttgaagatgagaaagataagatgactaaacttgctg
aatttaatcagactaaaagtgagtttagaaagaaagaaaatgattcaaccatcattaatt
tttatacaaaagtaatctttcctagtaatgaagcaaaagaagagttttacaagaaagcaa
acattccagctaatgaagagtttatcacgtttgaccagttaaaacggtattttaagaaga
agtatgtgagttaaatggcgagattaacatctaatgaaagagcattttttagattagctg
cacagcaacgacagcaaagaagaatggcaaacaacaatagagcaaaaagagtagtaagaa
aacgagcttcaactgggcatagtggtggatagcaaaggaatggttagatggcaagagcta
agtacaaacgatggctagagcctgataatctaaaaagaattagtgattgggctagaaatg
gtgtttcagagccacacatagccactgataaggataaaatggatatttcatattccacat
taaaagagtggaaaaacaaatatccggctatttcggccgccctaaaaaagaataaggaca
ttgttgatgctgaagtcgaagaatcttttgtttcgacaatgaaaaagcacaccctcacga
ccattcagtacaaaatggtcaagaaagataaatttgtgctgcaaggtgaacgacaaaagt
tcatgaatatgtataaaatggatcatcctaatgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search