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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


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Protein fig|572547.3.peg.1187: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
Translate Function Assignments


Context on contig NC_014011 from base 1164993 to 1177293 (12301 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1180 1164993 1166684 1692 +           hypothetical protein locus|Amico_1147, protein_id|YP_003553994.1, gi|294102136, geneID|8964091
1181 1166793 1167695 903 + 108         Type II restriction-modification system, DNA-methyltransferase M.Aco12261III (TGGCCA) locus|Amico_1148, protein_id|YP_003553995.1, gi|294102137, InterPro:IPR002294, InterPro:IPR012327, geneID|8964092
1182 1168100 1167786 315 - 90         hypothetical protein locus|Amico_1149, protein_id|YP_003553996.1, gi|294102138, geneID|8964093
1183 1168652 1168221 432 - 120         Prophage ps3 protein 01, C-terminal domain locus|Amico_1150, protein_id|YP_003553997.1, gi|294102139, geneID|8964094
1184 1169964 1168837 1128 - 184         Phage integrase locus|Amico_1151, protein_id|YP_003553998.1, gi|294102140, InterPro:IPR002104, geneID|8964095
rna.45 1170207 1170131 77 - 166         tRNA-Met-CAT  
1185 1170497 1170315 183 - 107     1: 5   [4Fe-4S] ferredoxin locus|Amico_1152, protein_id|YP_003553999.1, gi|294102141, InterPro:IPR001080, InterPro:IPR001450, InterPro:IPR017900, geneID|8964097
1186 1171368 1170577 792 - 79         Pur operon repressor PurR locus|Amico_1153, protein_id|YP_003554000.1, gi|294102142, InterPro:IPR000836, geneID|8964098
1187 1172240 1171365 876 - -4   2: 4 3   4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) locus|Amico_1154, protein_id|YP_003554001.1, gi|294102143, InterPro:IPR006204, geneID|8964099
1188 1172563 1172324 240 - 83 4     Veg protein locus|Amico_1155, protein_id|YP_003554002.1, gi|294102144, geneID|8964100
1189 1174600 1172660 1941 - 96     2: 2 1   Selenocysteine-specific translation elongation factor locus|Amico_1156, protein_id|YP_003554003.1, gi|294102145, InterPro:IPR000795, InterPro:IPR004161, InterPro:IPR004535, InterPro:IPR005225, InterPro:IPR015191, geneID|8964101
1190 1176026 1174593 1434 - -8     2: 2 1   L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) locus|Amico_1157, protein_id|YP_003554004.1, gi|294102146, InterPro:IPR000277, InterPro:IPR004534, InterPro:IPR018319, geneID|8964102
1191 1176032 1176148 117 + 5         hypothetical protein  
1192 1176225 1176812 588 + 76     2: 2 1   Uncharacterized protein Cj1505c locus|Amico_1158, protein_id|YP_003554005.1, gi|294102147, InterPro:IPR001455, InterPro:IPR019870, geneID|8964103
1193 1177293 1176838 456 - 25         hypothetical protein locus|Amico_1159, protein_id|YP_003554006.1, gi|294102148, geneID|8964104

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Isoprenoid_Biosynthesis OlgaZ 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis RossO 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)


  Protein Sequence

>fig|572547.3.peg.1187 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
MQYTLSSDGKLNLTLRITEKRGDGYHNLVSLFLRLPAMESLTISTYKDNNVREIATTGHI
VIDGKNIVEKTIECLESKGWSLPGLHVALAKQIPPGTGLGAGSGNAASFLRWARLFEGSE
VTSDILEKIGSDVSFLYSRSFLSLVVGKGEKSACRGPLPPMQIVVAIPGWGVSTSLAYAG
VDAFYGVDKGGSFPCNEWTGLAEVEKIYQSLLRGENVGFLPNDFYPWLAEQHPEYEAFFN
ECESSNALGYGLSGSGSSVFALFPANGKPVKLSQFEKMEWIQQILFWSDDR

MD5 = 64f02bc43e133b4fca61d8a7cb5b8d82


  DNA Sequence

>fig|572547.3.peg.1187 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
atgcaatataccctttcttctgatgggaaattaaacctcaccttgagaattacagaaaaa
aggggagatggctatcataacctggtctccctgtttttacgtttaccggcgatggagtca
ttgacaatttctacatataaagataataatgtcagggaaattgccacaactggccatatc
gtcatagatgggaaaaatattgtagaaaagacaatagagtgtcttgaaagtaaaggatgg
agtcttcctggtttacatgttgccctcgctaagcagatcccgcctggaacagggttgggg
gctggaagcggcaatgcggcttctttcttgcgatgggctcggcttttcgaaggaagcgaa
gtgacttccgatattcttgaaaagatcggttcagatgtttccttcctttacagcagatct
ttcctttcccttgttgtgggaaaaggagaaaaatcagcttgcagagggccgttgccgccc
atgcagatagttgtcgccatccctgggtggggggtgtctacgtcccttgcctacgcaggt
gtagatgccttttacggagtggataaggggggcagtttcccctgtaatgagtggactggc
ctggcagaggtggaaaaaatctaccaaagtcttctgaggggagaaaatgtagggtttcta
cccaatgatttttatccttggctggcggaacaacatcctgaatatgaagctttttttaat
gaatgtgagagttccaatgcattgggctatgggttgtctggcagcggaagcagtgttttc
gccttgttcccggcaaatggtaaaccggttaagctctcacaatttgaaaagatggaatgg
atccaacaaatcttattttggagtgatgatcgttga


  DNA with Flanking Sequence

>fig|572547.3.peg.1187 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
gatgccagggggtatactcgtcgagtgggggagaaacgagtcttgcttcttcataaactg
gaacaaaaaagtcaaaaataaggtaacaaaattgcaagactccagccatattgtttgtgt
tttttgcatttttgtgttataattcgtgaaacttatttataatagaggtgaccctggatg
gctggaaatcttgcctcaattcgtgagcaagtagcattgtacaagggaatgcgcgtgaag
taccggacatccaaaggacgtcgcaaaattgaagagaaacagggagttgttcttgaggtt
tatccgaatctatttaccctctatgtggagtctcaagacagtaaggtttcgttcagttat
gcggaactactaacaaaagaagtagaattagagcctatgtccggtaacaatacataataa
accttgtaatgcaacaaaaccctggcgttcaacacgccggggtatttttttgcctgctgt
gggatatggaggtcgataatatgcaatataccctttcttctgatgggaaattaaacctca
ccttgagaattacagaaaaaaggggagatggctatcataacctggtctccctgtttttac
gtttaccggcgatggagtcattgacaatttctacatataaagataataatgtcagggaaa
ttgccacaactggccatatcgtcatagatgggaaaaatattgtagaaaagacaatagagt
gtcttgaaagtaaaggatggagtcttcctggtttacatgttgccctcgctaagcagatcc
cgcctggaacagggttgggggctggaagcggcaatgcggcttctttcttgcgatgggctc
ggcttttcgaaggaagcgaagtgacttccgatattcttgaaaagatcggttcagatgttt
ccttcctttacagcagatctttcctttcccttgttgtgggaaaaggagaaaaatcagctt
gcagagggccgttgccgcccatgcagatagttgtcgccatccctgggtggggggtgtcta
cgtcccttgcctacgcaggtgtagatgccttttacggagtggataaggggggcagtttcc
cctgtaatgagtggactggcctggcagaggtggaaaaaatctaccaaagtcttctgaggg
gagaaaatgtagggtttctacccaatgatttttatccttggctggcggaacaacatcctg
aatatgaagctttttttaatgaatgtgagagttccaatgcattgggctatgggttgtctg
gcagcggaagcagtgttttcgccttgttcccggcaaatggtaaaccggttaagctctcac
aatttgaaaagatggaatggatccaacaaatcttattttggagtgatgatcgttgaaagg
acagagaacggaacgtctcatcaggactgtatgccgttttttgacaacgccgtctcggca
aatttcactcacagctctttcgaacgattttggcgtttcaaaaactgttataagtgatga
cgtggtactgattgattcggcgctgacccaggaaggtcttgggggcatacaggtagacag
aggccgtacaggcggagcttcatttatcccctctatgtctgaaaatgtaaaaggccagct
ttttttggagatcaaagacctgctttcccaagaggatcgaattttacccggcgggcttat
ttattacagcgatattctgtttaatccctattatgcgtcacgtcttgggcttattatggc
gacgtatttccaggcaacgaaacctgatatcgttatgacaactgaagttaagggaattcc
tctggggctctttactgcccatgctctcggcgttccccttgcagtttgccggttccgcaa
ccgtcccagtgatggt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

Score Peg Function
4 fig|572547.3.peg.1188 Veg protein


  Attributes

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  Protein Families

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