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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|572547.3.peg.1180: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_014011 from base 1160231 to 1172240 (12010 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1174 1160398 1160231 168 -           hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71         hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087
1177 1162873 1163148 276 + 60         Phage transcriptional regulator cro locus|Amico_1144, protein_id|YP_003553991.1, gi|294102133, geneID|8964088
1178 1163385 1163717 333 + 236         hypothetical protein locus|Amico_1145, protein_id|YP_003553992.1, gi|294102134, geneID|8964089
1179 1163794 1164873 1080 + 76         beta-lactamase-like protein locus|Amico_1146, protein_id|YP_003553993.1, gi|294102135, InterPro:IPR005135, geneID|8964090
1180 1164993 1166684 1692 + 119       hypothetical protein locus|Amico_1147, protein_id|YP_003553994.1, gi|294102136, geneID|8964091
1181 1166793 1167695 903 + 108 4     Type II restriction-modification system, DNA-methyltransferase M.Aco12261III (TGGCCA) locus|Amico_1148, protein_id|YP_003553995.1, gi|294102137, InterPro:IPR002294, InterPro:IPR012327, geneID|8964092
1182 1168100 1167786 315 - 90         hypothetical protein locus|Amico_1149, protein_id|YP_003553996.1, gi|294102138, geneID|8964093
1183 1168652 1168221 432 - 120         Prophage ps3 protein 01, C-terminal domain locus|Amico_1150, protein_id|YP_003553997.1, gi|294102139, geneID|8964094
1184 1169964 1168837 1128 - 184         Phage integrase locus|Amico_1151, protein_id|YP_003553998.1, gi|294102140, InterPro:IPR002104, geneID|8964095
rna.45 1170207 1170131 77 - 166         tRNA-Met-CAT  
1185 1170497 1170315 183 - 107     1: 1   [4Fe-4S] ferredoxin locus|Amico_1152, protein_id|YP_003553999.1, gi|294102141, InterPro:IPR001080, InterPro:IPR001450, InterPro:IPR017900, geneID|8964097
1186 1171368 1170577 792 - 79         Pur operon repressor PurR locus|Amico_1153, protein_id|YP_003554000.1, gi|294102142, InterPro:IPR000836, geneID|8964098
1187 1172240 1171365 876 - -4     2: 2 3   4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) locus|Amico_1154, protein_id|YP_003554001.1, gi|294102143, InterPro:IPR006204, geneID|8964099

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1180 hypothetical protein
MVKQIDIRKYRKMEDLSLVFSQGINILSGTNGTCKTSLLHIVSNSFQEVNKGCPWVTDAS
CLTAIKKVNKLINPKIETLTKGDKTYNDPANQVKGTLFTVEYYDHPSLEFRKHNSKANNR
YAIKPYYGKNRGDTLPFCPVIYLGLGRLFPFGEFQNDEAIRGVKGELPSTYQDEIKTFYE
DFTGISIESSSPQQMGDFKTRADFISDVEGIDSNTISAGEDNLFILLTAIISLKYYYEAT
ALSHEVTSILLVDEIDATLHPSILYKLLKLFEDYSNRYKIQIICTSHSLSLIEFALARKY
NVIYLLDNIESVFNMETPDIYKIKMYLHNISENEIYLGKKIPVFTEDEEAKTFLKILFEY
LAENEETQSFEAIRNYFHLVEACLGAKDLKNIFNDNYLLKSTLQSICILDGDQNGSAGMN
QNIICLPGEKSPEKMAMTYAIQLYENNDSFFADNGTPVNLGYTRLYFRENILHDIGNIQT
TINEHRAGGKSIHGVERALNKKVFSRHETFFNLIFRHWLHDDNNRAQILTFYDNLISMYK
KTAPFHGLNPNKIERINALSRTR

MD5 = 110d62e2d798ef966e5cac051872d58a


  DNA Sequence

>fig|572547.3.peg.1180 hypothetical protein
atggttaaacaaatagatataagaaaatatcgaaaaatggaagatctgtctcttgttttc
tctcaaggtatcaatattctttcaggaacaaatggcacttgcaaaacatccttactgcat
atagttagcaactctttccaagaggtaaacaagggatgcccctgggttactgatgcttct
tgtctaacagcgataaaaaaagttaacaaattaattaatcctaaaatagaaacattaact
aaaggtgataaaacgtataatgatcctgccaaccaagtaaaaggaactttatttactgta
gaatattacgatcatccctctttagaatttagaaaacacaactctaaagcaaataacagg
tatgcaataaaaccctactatgggaaaaatcgaggtgatactcttcccttttgccctgtc
atctacttagggttaggacgcttattcccattcggggagttccagaatgatgaagcaatt
agaggagttaaaggagaacttccttctacttatcaagatgaaataaagactttttatgaa
gattttactggaatttctatagaatcatcctcccctcaacaaatgggcgatttcaaaaca
agagcggattttataagcgacgtagaaggaattgattctaatactatttcggcaggagaa
gacaatctttttatattgcttactgccattatttcactgaaatattattatgaagctaca
gctctttcacatgaggtaaccagtatacttttagtagatgagatcgacgcaacattacac
ccctctattttatataaacttttaaagctcttcgaagactactcaaatagatacaagata
caaattatatgtacttctcatagtctgtccttaattgagttcgccctagcaagaaaatat
aatgttatttatttattagataatattgaaagcgtttttaatatggaaacgcctgatata
tacaaaataaagatgtaccttcacaacatctctgaaaatgaaatatacttagggaagaaa
atccctgtatttacagaagacgaagaagctaaaacattcctaaagattctttttgagtat
ttagcagaaaacgaagaaactcaatcatttgaagcaattagaaattactttcatttagtg
gaagcttgcttaggagcaaaggatttaaagaacatatttaatgataactatttgcttaaa
tctacattgcaatcgatctgcatattagacggagatcaaaacggttctgctggaatgaat
caaaatataatctgcttgccaggggaaaaatcacctgaaaaaatggcaatgacatatgcc
attcaactctatgaaaataacgattccttttttgcagataatggaacccctgtaaactta
ggctacactagactttattttagagagaacattctccatgatattggcaatattcaaact
acgataaatgaacatagagctggaggcaaaagcatacatggggtagaaagagcgttaaac
aaaaaagtattttcgagacatgaaaccttttttaatttaatttttagacactggctacat
gatgataataacagagcccaaatactaacattttatgataatttaatctctatgtataag
aaaaccgcaccttttcacggattaaatccaaacaaaatagaaagaattaatgcattatca
agaacaaggtag


  DNA with Flanking Sequence

>fig|572547.3.peg.1180 hypothetical protein
gtgggaaaaactgcatcgtggaccttatataaagtagaaactgctattgcttcacgctcg
acaaaaagcacccagcaccctgaccacgatatagtcgtgctttcccttgatgggcaaatg
ccttctgtagctgtagggggaattatcgcaccccaagtggtaaaacgacagaaagtactc
gcctcagactctgctggaagctactctatcgctgaagcctctcctctgtcaggcaacact
atcgtttacatcacgaaaacaggcaaaaaataccatacatcaggatgttcaagtcttaga
aagagtaaaattccgattaccttggctgaggcgaaagcgaaaggctatacaccatgttca
aggtgccgcccgccaaggtaatgagtaaacgcatatattatgaaaacatgttattaggac
aatatatataatttattaaaaaataagtctgtttaaatttctagagcagttgaatcaaca
tacgagcaggagtgatatctatggttaaacaaatagatataagaaaatatcgaaaaatgg
aagatctgtctcttgttttctctcaaggtatcaatattctttcaggaacaaatggcactt
gcaaaacatccttactgcatatagttagcaactctttccaagaggtaaacaagggatgcc
cctgggttactgatgcttcttgtctaacagcgataaaaaaagttaacaaattaattaatc
ctaaaatagaaacattaactaaaggtgataaaacgtataatgatcctgccaaccaagtaa
aaggaactttatttactgtagaatattacgatcatccctctttagaatttagaaaacaca
actctaaagcaaataacaggtatgcaataaaaccctactatgggaaaaatcgaggtgata
ctcttcccttttgccctgtcatctacttagggttaggacgcttattcccattcggggagt
tccagaatgatgaagcaattagaggagttaaaggagaacttccttctacttatcaagatg
aaataaagactttttatgaagattttactggaatttctatagaatcatcctcccctcaac
aaatgggcgatttcaaaacaagagcggattttataagcgacgtagaaggaattgattcta
atactatttcggcaggagaagacaatctttttatattgcttactgccattatttcactga
aatattattatgaagctacagctctttcacatgaggtaaccagtatacttttagtagatg
agatcgacgcaacattacacccctctattttatataaacttttaaagctcttcgaagact
actcaaatagatacaagatacaaattatatgtacttctcatagtctgtccttaattgagt
tcgccctagcaagaaaatataatgttatttatttattagataatattgaaagcgttttta
atatggaaacgcctgatatatacaaaataaagatgtaccttcacaacatctctgaaaatg
aaatatacttagggaagaaaatccctgtatttacagaagacgaagaagctaaaacattcc
taaagattctttttgagtatttagcagaaaacgaagaaactcaatcatttgaagcaatta
gaaattactttcatttagtggaagcttgcttaggagcaaaggatttaaagaacatattta
atgataactatttgcttaaatctacattgcaatcgatctgcatattagacggagatcaaa
acggttctgctggaatgaatcaaaatataatctgcttgccaggggaaaaatcacctgaaa
aaatggcaatgacatatgccattcaactctatgaaaataacgattccttttttgcagata
atggaacccctgtaaacttaggctacactagactttattttagagagaacattctccatg
atattggcaatattcaaactacgataaatgaacatagagctggaggcaaaagcatacatg
gggtagaaagagcgttaaacaaaaaagtattttcgagacatgaaaccttttttaatttaa
tttttagacactggctacatgatgataataacagagcccaaatactaacattttatgata
atttaatctctatgtataagaaaaccgcaccttttcacggattaaatccaaacaaaatag
aaagaattaatgcattatcaagaacaaggtagacacaaaacgaccaaacgtccacgctct
tttcaaaggaaataagtactggccaaaattttacatttcatatatgatgttcgtgattaa
ttttttaggaaggtggttacttggccttttacacaccccttcgctatcctggagggaaac
gcaaacttattaagttcatgaaaaatcttttagaggttaacaatctcaaaggatgccact
atatcgaaccctatgccgggggtgccggacttgctctccaattactttttgaagagcacg
cttcttgtattcatataaatgacctaaacgcttcaatatacagtttctggcatgctgtct
tgaataatacagataacttttgccgcttagtacaagacactcctattaccattggagagt
ggcatagacaaaaggctattcaatctcatgcagaagatctttctggttctctagagcttg
ctttctcaacgttctttcttaatcgaacaaaccgttcaggtatcattaaggg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
4 fig|572547.3.peg.1181 Type II restriction-modification system, DNA-methyltransferase M.Aco12261III (TGGCCA)


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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