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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


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Protein fig|572547.3.peg.1179: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: beta-lactamase-like protein
Translate Function Assignments


Context on contig NC_014011 from base 1158217 to 1169964 (11748 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1169 1158990 1158217 774 -           Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4         hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4         hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2         hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11         hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084
1174 1160398 1160231 168 - 399         hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71         hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087
1177 1162873 1163148 276 + 60         Phage transcriptional regulator cro locus|Amico_1144, protein_id|YP_003553991.1, gi|294102133, geneID|8964088
1178 1163385 1163717 333 + 236         hypothetical protein locus|Amico_1145, protein_id|YP_003553992.1, gi|294102134, geneID|8964089
1179 1163794 1164873 1080 + 76         beta-lactamase-like protein locus|Amico_1146, protein_id|YP_003553993.1, gi|294102135, InterPro:IPR005135, geneID|8964090
1180 1164993 1166684 1692 + 119         hypothetical protein locus|Amico_1147, protein_id|YP_003553994.1, gi|294102136, geneID|8964091
1181 1166793 1167695 903 + 108         Type II restriction-modification system, DNA-methyltransferase M.Aco12261III (TGGCCA) locus|Amico_1148, protein_id|YP_003553995.1, gi|294102137, InterPro:IPR002294, InterPro:IPR012327, geneID|8964092
1182 1168100 1167786 315 - 90         hypothetical protein locus|Amico_1149, protein_id|YP_003553996.1, gi|294102138, geneID|8964093
1183 1168652 1168221 432 - 120         Prophage ps3 protein 01, C-terminal domain locus|Amico_1150, protein_id|YP_003553997.1, gi|294102139, geneID|8964094
1184 1169964 1168837 1128 - 184         Phage integrase locus|Amico_1151, protein_id|YP_003553998.1, gi|294102140, InterPro:IPR002104, geneID|8964095

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1179 beta-lactamase-like protein
MTSVLAVVFLSIASQAMALSIGTFNIEYFNVSGKNAYSPSHCSSLAKTITTSQANVLALQ
EIEGDATMRFFVTKFLPGWKYAGNDTGGRQNLYFLWDTATIKLLDGPSAYGANASFRFEG
KSYRLNDRPHLVGTFLDKEGNRRFTLVNVHLKSQSIRGKDDKERAERYNKAKRQAQIAGI
NKLVTTLKGPVFILGDYNTNTPSGTSFPLSGLGEGHYSYDNMNSNLDYIGFTNVGKTASW
TLYKVETAIASRSTKSTQHPDHDIVVLSLDGQMPSVAVGGIIAPQVVKRQKVLASDSAGS
YSIAEASPLSGNTIVYITKTGKKYHTSGCSSLRKSKIPITLAEAKAKGYTPCSRCRPPR

MD5 = be98e1b1614ab39c12ca87f1ca3c0c12


  DNA Sequence

>fig|572547.3.peg.1179 beta-lactamase-like protein
gtgaccagtgttcttgcagtagtttttttaagtatcgccagtcaagcaatggcactttca
atagggaccttcaatatcgagtatttcaacgtttcgggtaaaaatgcctactcgccctcc
cactgctcctctctcgccaaaaccataactacatctcaagcgaatgtcttagcccttcaa
gagattgaaggggatgctactatgcggttttttgtaaccaaatttctgcctggatggaaa
tatgcaggaaacgacaccggaggaagacaaaacctctattttctttgggacaccgcaacc
ataaagctattagatgggccatcagcctatggagcaaatgcctctttccgtttcgaaggg
aaaagctacaggttaaatgaccggccccaccttgtgggcacatttttagataaagaggga
aaccgtcggttcaccctggtaaacgttcatctcaaaagccagagcatcaggggcaaagat
gataaagagcgggcagaacgatacaacaaagcgaagcgtcaagcccagatagctggaatc
aacaaacttgttacaactctaaaaggccccgtattcatccttggagactacaataccaac
accccttccggaacatctttccccttatcaggccttggcgaaggtcattacagctacgac
aatatgaatagcaaccttgattacatcggattcactaatgtgggaaaaactgcatcgtgg
accttatataaagtagaaactgctattgcttcacgctcgacaaaaagcacccagcaccct
gaccacgatatagtcgtgctttcccttgatgggcaaatgccttctgtagctgtaggggga
attatcgcaccccaagtggtaaaacgacagaaagtactcgcctcagactctgctggaagc
tactctatcgctgaagcctctcctctgtcaggcaacactatcgtttacatcacgaaaaca
ggcaaaaaataccatacatcaggatgttcaagtcttagaaagagtaaaattccgattacc
ttggctgaggcgaaagcgaaaggctatacaccatgttcaaggtgccgcccgccaaggtaa


  DNA with Flanking Sequence

>fig|572547.3.peg.1179 beta-lactamase-like protein
tgtaccactagaagttgcttcagagctacctaaagctcctacacctaccagggaacctat
aataactatcgacccagacctttttaactctatgcttacagaaagagcacataagttgcc
atacttccctaaaggaacaatcgaaatcgaagaaataaaaaatgatgttattcgcatgtg
gttttattttgacgaaatgccaacatctaccaatgttattgagataacggggaaaagaat
agtaaaaacggcaatagatattttaatggaaaatgaaatcgatccttgtgatccatctgt
ttttatacgaacagtagtagctaaaaaagaaaaaggcgtaacaggcaaaaaccttgttcg
tatctttgggaaagcacattacgatagacttactgattctattaaatgggagataaggaa
ataatttagaaacttacaacacaaaaatattacaaaggggcctgatcataattcgaattc
gaattcgtattcgttctatcgtgaccagtgttcttgcagtagtttttttaagtatcgcca
gtcaagcaatggcactttcaatagggaccttcaatatcgagtatttcaacgtttcgggta
aaaatgcctactcgccctcccactgctcctctctcgccaaaaccataactacatctcaag
cgaatgtcttagcccttcaagagattgaaggggatgctactatgcggttttttgtaacca
aatttctgcctggatggaaatatgcaggaaacgacaccggaggaagacaaaacctctatt
ttctttgggacaccgcaaccataaagctattagatgggccatcagcctatggagcaaatg
cctctttccgtttcgaagggaaaagctacaggttaaatgaccggccccaccttgtgggca
catttttagataaagagggaaaccgtcggttcaccctggtaaacgttcatctcaaaagcc
agagcatcaggggcaaagatgataaagagcgggcagaacgatacaacaaagcgaagcgtc
aagcccagatagctggaatcaacaaacttgttacaactctaaaaggccccgtattcatcc
ttggagactacaataccaacaccccttccggaacatctttccccttatcaggccttggcg
aaggtcattacagctacgacaatatgaatagcaaccttgattacatcggattcactaatg
tgggaaaaactgcatcgtggaccttatataaagtagaaactgctattgcttcacgctcga
caaaaagcacccagcaccctgaccacgatatagtcgtgctttcccttgatgggcaaatgc
cttctgtagctgtagggggaattatcgcaccccaagtggtaaaacgacagaaagtactcg
cctcagactctgctggaagctactctatcgctgaagcctctcctctgtcaggcaacacta
tcgtttacatcacgaaaacaggcaaaaaataccatacatcaggatgttcaagtcttagaa
agagtaaaattccgattaccttggctgaggcgaaagcgaaaggctatacaccatgttcaa
ggtgccgcccgccaaggtaatgagtaaacgcatatattatgaaaacatgttattaggaca
atatatataatttattaaaaaataagtctgtttaaatttctagagcagttgaatcaacat
acgagcaggagtgatatctatggttaaacaaatagatataagaaaatatcgaaaaatgga
agatctgtctcttgttttctctcaaggtatcaatattctttcaggaacaaatggcacttg
caaaacatccttactgcatatagttagcaactctttccaagaggtaaacaagggatgccc
ctgggttactgatgcttcttgtctaacagcgataaaaaaagttaacaaattaattaatcc
taaaatagaaacattaactaaaggtgataaaacgtataatgatcctgccaaccaagtaaa
aggaactttatttactgtagaatattacgatcatccctctttagaatttagaaaacacaa
ctctaaagcaaataacaggtatgcaataaaaccctactat


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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