The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|572547.3.peg.1178: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_014011 from base 1158217 to 1168652 (10436 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1169 1158990 1158217 774 -           Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4         hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4         hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2         hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11         hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084
1174 1160398 1160231 168 - 399         hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71         hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087
1177 1162873 1163148 276 + 60         Phage transcriptional regulator cro locus|Amico_1144, protein_id|YP_003553991.1, gi|294102133, geneID|8964088
1178 1163385 1163717 333 + 236         hypothetical protein locus|Amico_1145, protein_id|YP_003553992.1, gi|294102134, geneID|8964089
1179 1163794 1164873 1080 + 76         beta-lactamase-like protein locus|Amico_1146, protein_id|YP_003553993.1, gi|294102135, InterPro:IPR005135, geneID|8964090
1180 1164993 1166684 1692 + 119         hypothetical protein locus|Amico_1147, protein_id|YP_003553994.1, gi|294102136, geneID|8964091
1181 1166793 1167695 903 + 108         Type II restriction-modification system, DNA-methyltransferase M.Aco12261III (TGGCCA) locus|Amico_1148, protein_id|YP_003553995.1, gi|294102137, InterPro:IPR002294, InterPro:IPR012327, geneID|8964092
1182 1168100 1167786 315 - 90         hypothetical protein locus|Amico_1149, protein_id|YP_003553996.1, gi|294102138, geneID|8964093
1183 1168652 1168221 432 - 120         Prophage ps3 protein 01, C-terminal domain locus|Amico_1150, protein_id|YP_003553997.1, gi|294102139, geneID|8964094

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1178 hypothetical protein
MLTERAHKLPYFPKGTIEIEEIKNDVIRMWFYFDEMPTSTNVIEITGKRIVKTAIDILME
NEIDPCDPSVFIRTVVAKKEKGVTGKNLVRIFGKAHYDRLTDSIKWEIRK

MD5 = 7fcb0cf54d789b6bbdfe60125a0478a0


  DNA Sequence

>fig|572547.3.peg.1178 hypothetical protein
atgcttacagaaagagcacataagttgccatacttccctaaaggaacaatcgaaatcgaa
gaaataaaaaatgatgttattcgcatgtggttttattttgacgaaatgccaacatctacc
aatgttattgagataacggggaaaagaatagtaaaaacggcaatagatattttaatggaa
aatgaaatcgatccttgtgatccatctgtttttatacgaacagtagtagctaaaaaagaa
aaaggcgtaacaggcaaaaaccttgttcgtatctttgggaaagcacattacgatagactt
actgattctattaaatgggagataaggaaataa


  DNA with Flanking Sequence

>fig|572547.3.peg.1178 hypothetical protein
ggaattcccgacagaagtacagtcgtcgtgaatcctgcagaagaagtttatgacggtgat
acggcattagtgtgttttggccgccaaaacgaatgggcaataaagtgggtgtattttaat
aaggctgacggttctgttgaaatccgttcagcagcccctcagtataagcctatggttttt
acaaaagaagatatagagctcgggctcttttgcatagtagggaaggtgacacgtttaaca
gcagaaccaagaaaggggatctaatagatttttagcgaaaggagtttttattaatgtcta
aaaagaaaaaatggttattcatttttctaggcttagtattccttgctattttcactactg
caatgttgccagaagaaaagaaccaagaaagatctaaacaagagcaaactgtaccactag
aagttgcttcagagctacctaaagctcctacacctaccagggaacctataataactatcg
acccagacctttttaactctatgcttacagaaagagcacataagttgccatacttcccta
aaggaacaatcgaaatcgaagaaataaaaaatgatgttattcgcatgtggttttattttg
acgaaatgccaacatctaccaatgttattgagataacggggaaaagaatagtaaaaacgg
caatagatattttaatggaaaatgaaatcgatccttgtgatccatctgtttttatacgaa
cagtagtagctaaaaaagaaaaaggcgtaacaggcaaaaaccttgttcgtatctttggga
aagcacattacgatagacttactgattctattaaatgggagataaggaaataatttagaa
acttacaacacaaaaatattacaaaggggcctgatcataattcgaattcgaattcgtatt
cgttctatcgtgaccagtgttcttgcagtagtttttttaagtatcgccagtcaagcaatg
gcactttcaatagggaccttcaatatcgagtatttcaacgtttcgggtaaaaatgcctac
tcgccctcccactgctcctctctcgccaaaaccataactacatctcaagcgaatgtctta
gcccttcaagagattgaaggggatgctactatgcggttttttgtaaccaaatttctgcct
ggatggaaatatgcaggaaacgacaccggaggaagacaaaacctctattttctttgggac
accgcaaccataaagctattagatgggccatcagcctatggagcaaatgcctctttccgt
ttcgaagggaaaagctacaggttaaatgaccggccccaccttgtgggcacatttttagat
aaagagggaaacc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search