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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|572547.3.peg.1170: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_014011 from base 1154151 to 1164873 (10723 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1161 1154645 1154151 495 -       1: 1   hypothetical protein locus|Amico_1127, protein_id|YP_003553975.1, gi|294102117, geneID|8964071
1162 1155028 1154837 192 - 191     1: 1   hypothetical protein locus|Amico_1129, protein_id|YP_003553977.1, gi|294102119, geneID|8964073
1163 1155252 1155034 219 - 5         Two-component transcriptional response regulator, LuxR family  
1164 1156177 1155245 933 - -8         Phage DNA helicase loader locus|Amico_1131, protein_id|YP_003553978.1, gi|294102120, InterPro:IPR002611, InterPro:IPR003593, geneID|8964075
1165 1157043 1156174 870 - -4     1: 1   hypothetical protein locus|Amico_1132, protein_id|YP_003553979.1, gi|294102121, geneID|8964076
1166 1157510 1157073 438 - 29     4: 5 3 2 4   Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) locus|Amico_1133, protein_id|YP_003553980.1, gi|294102122, InterPro:IPR008180, InterPro:IPR008181, geneID|8964077
1167 1157959 1157600 360 - 89     1: 1   hypothetical protein locus|Amico_1134, protein_id|YP_003553981.1, gi|294102123, InterPro:IPR001589, geneID|8964078
1168 1158113 1157970 144 - 10     1: 1   hypothetical protein locus|Amico_1135, protein_id|YP_003553982.1, gi|294102124, geneID|8964079
1169 1158990 1158217 774 - 103         Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4     1: 1   hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4     1: 1   hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2     1: 1   hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11     1: 1   hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084
1174 1160398 1160231 168 - 399     1: 1   hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71     1: 1   hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087
1177 1162873 1163148 276 + 60         Phage transcriptional regulator cro locus|Amico_1144, protein_id|YP_003553991.1, gi|294102133, geneID|8964088
1178 1163385 1163717 333 + 236     1: 1   hypothetical protein locus|Amico_1145, protein_id|YP_003553992.1, gi|294102134, geneID|8964089
1179 1163794 1164873 1080 + 76         beta-lactamase-like protein locus|Amico_1146, protein_id|YP_003553993.1, gi|294102135, InterPro:IPR005135, geneID|8964090

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DHQS_phosphatase_fusion Thamm_Antje_user hypothetical protein


  Protein Sequence

>fig|572547.3.peg.1170 hypothetical protein
MKLEVNEAVVRLLNYRGQKLKGVILQRTEENARARAAISEACAILRKEVSG

MD5 = aadf4e48709d675818e08e7606bc1cd5


  DNA Sequence

>fig|572547.3.peg.1170 hypothetical protein
atgaagctagaagtcaatgaagccgtcgttagattgttaaattatcgaggccaaaaactt
aagggggtaattttacaacgaaccgaagagaacgccagggcaagagcagccatatcagaa
gcttgcgcaatactccgtaaggaggtgagtggatga


  DNA with Flanking Sequence

>fig|572547.3.peg.1170 hypothetical protein
cgcgttgatgttttgtatggcggagggcgcatggtgcgttacagatggaaaacaaaattt
gggagggcagaagaaaatgtttcttaaacattcaacaagaaagttttttgaactgctcgc
taagtctggagtagtcagcggtccatattatttcaagggaatctggttcgcgaaaaggga
ggcatccagtcttctcagcgccatttgcggggctgatgagcggaaaaggctcagcgcaag
atatcaagatatatcaatcagagacgttcaaaaactttcagctttcgtggaagaggcata
gcaatggttgaggtggtgtggctttcgaaagaaagaaatttgacagatttaagcgatgcc
atagagcttcaacgagctcacgttgaccatgcttccaggaaccacaagagattcaatgac
cttgaaagcaaacggagaatcaggaaggagatcctccacctgatttacctcgaagccaag
gcggtgaaggtgtgtcaggcatgaagctagaagtcaatgaagccgtcgttagattgttaa
attatcgaggccaaaaacttaagggggtaattttacaacgaaccgaagagaacgccaggg
caagagcagccatatcagaagcttgcgcaatactccgtaaggaggtgagtggatgaaggg
gctacagatctttgagttcgagaatcaagatgtgcgggtgcgcattgatgaggcggggaa
tccgtggtgggttgccagggacgtatgtgatgtgttgggatacagcaatgcaagggacgc
tgtaaacaatcacgtcagaattaaacatagagatgctgtcgcaattcccgacgccatggg
acgaaatcaacttacctcggttatatctgagccaggtctttattccctggtattacgttc
aaagcttccttcggccgtaaggtttcaagactgggttacagaagaagttcttcccgccat
acgcaagcatagcgcctacctaactccacaaaaaatagaagaagttttatgcaaccctga
cacgattatccggttggcgactgaccttaaaaaagaacgtgagcaacggttgcgacttgc
ttcgaaggtgagggaagatgctccaaaagtgatctttgctgagagtgtttcggcgtcaca
tacgtcaattcttgta


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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