The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|572547.3.peg.1170: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_014011 from base 1154151 to 1164873 (10723 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1161 1154645 1154151 495 -           hypothetical protein locus|Amico_1127, protein_id|YP_003553975.1, gi|294102117, geneID|8964071
1162 1155028 1154837 192 - 191         hypothetical protein locus|Amico_1129, protein_id|YP_003553977.1, gi|294102119, geneID|8964073
1163 1155252 1155034 219 - 5         Two-component transcriptional response regulator, LuxR family  
1164 1156177 1155245 933 - -8         Phage DNA helicase loader locus|Amico_1131, protein_id|YP_003553978.1, gi|294102120, InterPro:IPR002611, InterPro:IPR003593, geneID|8964075
1165 1157043 1156174 870 - -4         hypothetical protein locus|Amico_1132, protein_id|YP_003553979.1, gi|294102121, geneID|8964076
1166 1157510 1157073 438 - 29     4: 1 4 3 2   Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) locus|Amico_1133, protein_id|YP_003553980.1, gi|294102122, InterPro:IPR008180, InterPro:IPR008181, geneID|8964077
1167 1157959 1157600 360 - 89         hypothetical protein locus|Amico_1134, protein_id|YP_003553981.1, gi|294102123, InterPro:IPR001589, geneID|8964078
1168 1158113 1157970 144 - 10         hypothetical protein locus|Amico_1135, protein_id|YP_003553982.1, gi|294102124, geneID|8964079
1169 1158990 1158217 774 - 103         Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4         hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4         hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2         hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11         hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084
1174 1160398 1160231 168 - 399         hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71         hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087
1177 1162873 1163148 276 + 60         Phage transcriptional regulator cro locus|Amico_1144, protein_id|YP_003553991.1, gi|294102133, geneID|8964088
1178 1163385 1163717 333 + 236         hypothetical protein locus|Amico_1145, protein_id|YP_003553992.1, gi|294102134, geneID|8964089
1179 1163794 1164873 1080 + 76         beta-lactamase-like protein locus|Amico_1146, protein_id|YP_003553993.1, gi|294102135, InterPro:IPR005135, geneID|8964090

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1170 hypothetical protein
MKLEVNEAVVRLLNYRGQKLKGVILQRTEENARARAAISEACAILRKEVSG

MD5 = aadf4e48709d675818e08e7606bc1cd5


  DNA Sequence

>fig|572547.3.peg.1170 hypothetical protein
atgaagctagaagtcaatgaagccgtcgttagattgttaaattatcgaggccaaaaactt
aagggggtaattttacaacgaaccgaagagaacgccagggcaagagcagccatatcagaa
gcttgcgcaatactccgtaaggaggtgagtggatga


  DNA with Flanking Sequence

>fig|572547.3.peg.1170 hypothetical protein
cgcgttgatgttttgtatggcggagggcgcatggtgcgttacagatggaaaacaaaattt
gggagggcagaagaaaatgtttcttaaacattcaacaagaaagttttttgaactgctcgc
taagtctggagtagtcagcggtccatattatttcaagggaatctggttcgcgaaaaggga
ggcatccagtcttctcagcgccatttgcggggctgatgagcggaaaaggctcagcgcaag
atatcaagatatatcaatcagagacgttcaaaaactttcagctttcgtggaagaggcata
gcaatggttgaggtggtgtggctttcgaaagaaagaaatttgacagatttaagcgatgcc
atagagcttcaacgagctcacgttgaccatgcttccaggaaccacaagagattcaatgac
cttgaaagcaaacggagaatcaggaaggagatcctccacctgatttacctcgaagccaag
gcggtgaaggtgtgtcaggcatgaagctagaagtcaatgaagccgtcgttagattgttaa
attatcgaggccaaaaacttaagggggtaattttacaacgaaccgaagagaacgccaggg
caagagcagccatatcagaagcttgcgcaatactccgtaaggaggtgagtggatgaaggg
gctacagatctttgagttcgagaatcaagatgtgcgggtgcgcattgatgaggcggggaa
tccgtggtgggttgccagggacgtatgtgatgtgttgggatacagcaatgcaagggacgc
tgtaaacaatcacgtcagaattaaacatagagatgctgtcgcaattcccgacgccatggg
acgaaatcaacttacctcggttatatctgagccaggtctttattccctggtattacgttc
aaagcttccttcggccgtaaggtttcaagactgggttacagaagaagttcttcccgccat
acgcaagcatagcgcctacctaactccacaaaaaatagaagaagttttatgcaaccctga
cacgattatccggttggcgactgaccttaaaaaagaacgtgagcaacggttgcgacttgc
ttcgaaggtgagggaagatgctccaaaagtgatctttgctgagagtgtttcggcgtcaca
tacgtcaattcttgta


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search