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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|572547.3.peg.1165: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_014011 from base 1150223 to 1162812 (12590 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1157 1152088 1150223 1866 -           Phage terminase, large subunit locus|Amico_1123, protein_id|YP_003553971.1, gi|294102113, InterPro:IPR008866, geneID|8964067
1158 1152605 1152081 525 - -8         hypothetical protein locus|Amico_1124, protein_id|YP_003553972.1, gi|294102114, geneID|8964068
1159 1153527 1152964 564 - 358         Phage integrase locus|Amico_1125, protein_id|YP_003553973.1, gi|294102115, InterPro:IPR002104, geneID|8964069
1160 1153772 1153569 204 - 41         hypothetical protein locus|Amico_1126, protein_id|YP_003553974.1, gi|294102116, geneID|8964070
1161 1154645 1154151 495 - 378         hypothetical protein locus|Amico_1127, protein_id|YP_003553975.1, gi|294102117, geneID|8964071
1162 1155028 1154837 192 - 191         hypothetical protein locus|Amico_1129, protein_id|YP_003553977.1, gi|294102119, geneID|8964073
1163 1155252 1155034 219 - 5         Two-component transcriptional response regulator, LuxR family  
1164 1156177 1155245 933 - -8         Phage DNA helicase loader locus|Amico_1131, protein_id|YP_003553978.1, gi|294102120, InterPro:IPR002611, InterPro:IPR003593, geneID|8964075
1165 1157043 1156174 870 - -4         hypothetical protein locus|Amico_1132, protein_id|YP_003553979.1, gi|294102121, geneID|8964076
1166 1157510 1157073 438 - 29     4: 3 2 4 1   Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) locus|Amico_1133, protein_id|YP_003553980.1, gi|294102122, InterPro:IPR008180, InterPro:IPR008181, geneID|8964077
1167 1157959 1157600 360 - 89         hypothetical protein locus|Amico_1134, protein_id|YP_003553981.1, gi|294102123, InterPro:IPR001589, geneID|8964078
1168 1158113 1157970 144 - 10         hypothetical protein locus|Amico_1135, protein_id|YP_003553982.1, gi|294102124, geneID|8964079
1169 1158990 1158217 774 - 103         Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4         hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4         hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2         hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11         hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084
1174 1160398 1160231 168 - 399         hypothetical protein locus|Amico_1141, protein_id|YP_003553988.1, gi|294102130, InterPro:IPR001387, geneID|8964085
1175 1160642 1161322 681 + 243         Phage repressor protein cI locus|Amico_1142, protein_id|YP_003553989.1, gi|294102131, InterPro:IPR001387, InterPro:IPR019759, geneID|8964086
1176 1161394 1162812 1419 + 71         hypothetical protein locus|Amico_1143, protein_id|YP_003553990.1, gi|294102132, geneID|8964087

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1165 hypothetical protein
MADQTLLNDGRDFWWACVDICVIQDKNLSPVDKTVYAVLCTFASVNGRKCFPKVATIAEN
AGCSIRAVQESLKTLEAKGYLERNARYKEKQQLSSEYVIIGHRRGAPHAGVQEVHQGGAP
NVVPELEPYELYTSLSEKEEKPSDEDLPSQENNEIAEQENTEFVDIDDVPQVMRPSVEYF
LLKTGRKGITSGELFAVKTLEKIHVPARVNQEIGKAVARYEKKKRLLSTLTLEYIYESLK
YQTSGKSKSKARKTQVKDPYEEQRAADLKEWEKQQQAALIEKYGGEPEP

MD5 = ab34c41136810ff4447c3d1ffc890a17


  DNA Sequence

>fig|572547.3.peg.1165 hypothetical protein
gtggcagatcaaacactgctgaatgatggccgtgatttttggtgggcttgtgtagatatt
tgcgttattcaagataaaaacctttcccctgttgacaagacagtttacgcggttctttgc
acctttgcctctgtaaatggcaggaagtgctttccgaaagtggccactatagcagaaaat
gcggggtgctcgattcgtgcagtacaagagagcctgaaaactcttgaggcgaaagggtat
ttagaacgtaacgctcgatataaagagaagcagcagttgtcttcggaatatgtcattatc
ggtcatagaaggggtgcaccacatgcaggggtgcaggaggtgcaccaggggggtgcacca
aacgtagtaccggaactagaaccatatgaactatatacttctctttcagagaaggaagaa
aagccctctgacgaggatcttccgtcacaggaaaacaacgaaatagcagagcaggaaaat
acagaattcgttgatattgacgatgttccacaggtgatgcgcccgtccgtggaatatttc
ttgctcaaaacgggcagaaagggaatcacttcaggagagcttttcgcagtcaaaaccctc
gaaaaaatccatgtccccgcgcgggtgaaccaagagattgggaaggctgttgccaggtac
gagaaaaagaaaaggctgctgagcactctcactcttgaatatatctacgagagtttgaaa
taccagacttcggggaaaagcaaatcaaaggcacgaaaaacacaagtcaaagatccctac
gaagagcaacgggcagcggatctcaaagagtgggaaaaacagcaacaggcagctcttatt
gaaaaatatggaggtgagcctgagccatga


  DNA with Flanking Sequence

>fig|572547.3.peg.1165 hypothetical protein
cttgagatgcgtaaagcctgaggaggtttaactatggacaatcttagaatcgttgttgag
gacgaactttttataccaaaaagaaaaaataccggcgacgctggtgcagacattaaaagt
gctgtagatgttgttattcaacccggggaagcttgcaacattccggcaggctttaagatc
gccattccgtatcaatatggaggttttatttttcccaggagcggtttggcctataagcac
ggaatacgcctctgtaacggagtaggcgttatagatcaccagtatcgtggggaagtaatg
cttcctcttcggaacgatggtatgaaaccctttgccatacagcgtggagatcggctagct
cagcttgttattctcaaagtgaaactgcccggctttgtagttgtagatgcactggatgaa
accgagcgtggagagggcggttttggcagtacaggggtgaggggcgagtaaggaaacatg
caaaagaagaggtgaagaaagtggcagatcaaacactgctgaatgatggccgtgattttt
ggtgggcttgtgtagatatttgcgttattcaagataaaaacctttcccctgttgacaaga
cagtttacgcggttctttgcacctttgcctctgtaaatggcaggaagtgctttccgaaag
tggccactatagcagaaaatgcggggtgctcgattcgtgcagtacaagagagcctgaaaa
ctcttgaggcgaaagggtatttagaacgtaacgctcgatataaagagaagcagcagttgt
cttcggaatatgtcattatcggtcatagaaggggtgcaccacatgcaggggtgcaggagg
tgcaccaggggggtgcaccaaacgtagtaccggaactagaaccatatgaactatatactt
ctctttcagagaaggaagaaaagccctctgacgaggatcttccgtcacaggaaaacaacg
aaatagcagagcaggaaaatacagaattcgttgatattgacgatgttccacaggtgatgc
gcccgtccgtggaatatttcttgctcaaaacgggcagaaagggaatcacttcaggagagc
ttttcgcagtcaaaaccctcgaaaaaatccatgtccccgcgcgggtgaaccaagagattg
ggaaggctgttgccaggtacgagaaaaagaaaaggctgctgagcactctcactcttgaat
atatctacgagagtttgaaataccagacttcggggaaaagcaaatcaaaggcacgaaaaa
cacaagtcaaagatccctacgaagagcaacgggcagcggatctcaaagagtgggaaaaac
agcaacaggcagctcttattgaaaaatatggaggtgagcctgagccatgacggaagcggc
aaggagtatcgatgttcttttgtcagcgtaccagccccacgccttagagcagtcgcgaga
aagagcccttgattacgttcgccgccttctcaatgacccatttttaaaacagtcagattt
atacggctcaacagttgattttctagctgcgatggagcaagagggctactgcgcaaattg
tcctggccttggcgcatgcaaataccgcgggctgcgctgggctgtttcgggggaaagtct
cttcggccggcaggttttggtggcagggattggaaactgcagcgatcgtgagaaacatga
gctgcagaaaaagacagagcagctgattaagacgagcaagattccagatgccatggagcg
ctgcagtttcgagacattccagactgttggcgatcctgtgatcagaacggcaaagggcct
agccatggcgtgcgtggaagatggaagctctcttattttaggcgggggaacaggagtagg
gaagacacac


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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