The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|572547.3.peg.1162: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_014011 from base 1148538 to 1159831 (11294 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1155 1150022 1148538 1485 -       1: 1   Phage head, portal protein B locus|Amico_1121, protein_id|YP_003553969.1, gi|294102111, InterPro:IPR006429, geneID|8964065
1156 1150204 1150016 189 - -7     1: 1   Phage head, head-tail joining protein W locus|Amico_1122, protein_id|YP_003553970.1, gi|294102112, geneID|8964066
1157 1152088 1150223 1866 - 18         Phage terminase, large subunit locus|Amico_1123, protein_id|YP_003553971.1, gi|294102113, InterPro:IPR008866, geneID|8964067
1158 1152605 1152081 525 - -8     1: 1   hypothetical protein locus|Amico_1124, protein_id|YP_003553972.1, gi|294102114, geneID|8964068
1159 1153527 1152964 564 - 358         Phage integrase locus|Amico_1125, protein_id|YP_003553973.1, gi|294102115, InterPro:IPR002104, geneID|8964069
1160 1153772 1153569 204 - 41     1: 1   hypothetical protein locus|Amico_1126, protein_id|YP_003553974.1, gi|294102116, geneID|8964070
1161 1154645 1154151 495 - 378     1: 1   hypothetical protein locus|Amico_1127, protein_id|YP_003553975.1, gi|294102117, geneID|8964071
1162 1155028 1154837 192 - 191     1: 1   hypothetical protein locus|Amico_1129, protein_id|YP_003553977.1, gi|294102119, geneID|8964073
1163 1155252 1155034 219 - 5         Two-component transcriptional response regulator, LuxR family  
1164 1156177 1155245 933 - -8         Phage DNA helicase loader locus|Amico_1131, protein_id|YP_003553978.1, gi|294102120, InterPro:IPR002611, InterPro:IPR003593, geneID|8964075
1165 1157043 1156174 870 - -4     1: 1   hypothetical protein locus|Amico_1132, protein_id|YP_003553979.1, gi|294102121, geneID|8964076
1166 1157510 1157073 438 - 29     4: 4 3 5 2   Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) locus|Amico_1133, protein_id|YP_003553980.1, gi|294102122, InterPro:IPR008180, InterPro:IPR008181, geneID|8964077
1167 1157959 1157600 360 - 89     1: 1   hypothetical protein locus|Amico_1134, protein_id|YP_003553981.1, gi|294102123, InterPro:IPR001589, geneID|8964078
1168 1158113 1157970 144 - 10     1: 1   hypothetical protein locus|Amico_1135, protein_id|YP_003553982.1, gi|294102124, geneID|8964079
1169 1158990 1158217 774 - 103         Phage antirepressor protein locus|Amico_1136, protein_id|YP_003553983.1, gi|294102125, InterPro:IPR003497, InterPro:IPR005039, geneID|8964080
1170 1159142 1158987 156 - -4     1: 1   hypothetical protein locus|Amico_1137, protein_id|YP_003553984.1, gi|294102126, geneID|8964081
1171 1159339 1159139 201 - -4     1: 1   hypothetical protein locus|Amico_1138, protein_id|YP_003553985.1, gi|294102127, geneID|8964082
1172 1159566 1159342 225 - 2     1: 1   hypothetical protein locus|Amico_1139, protein_id|YP_003553986.1, gi|294102128, geneID|8964083
1173 1159831 1159556 276 - -11     1: 1   hypothetical protein locus|Amico_1140, protein_id|YP_003553987.1, gi|294102129, geneID|8964084

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DHQS_phosphatase_fusion Thamm_Antje_user hypothetical protein


  Protein Sequence

>fig|572547.3.peg.1162 hypothetical protein
MSDHKPCPFCGGEAKICKQKISLSKVEEYCVFNVYCMACKARIKAAKEYDIAWSLWDRRA
GNG

MD5 = 231f6a226fa09365720ba0e87458176e


  DNA Sequence

>fig|572547.3.peg.1162 hypothetical protein
atgagtgaccacaaaccctgcccgttctgcgggggggaggcaaaaatttgcaaacaaaaa
atatctctgagcaaagtggaagagtactgtgtttttaatgtctactgtatggcttgtaag
gccagaattaaggctgccaaagaatacgatatagcatggagtctctgggataggagggct
ggaaatggctaa


  DNA with Flanking Sequence

>fig|572547.3.peg.1162 hypothetical protein
gtgtggccatcgatgatttaggggcacaacgaaaagataaaagctgggtagacgagcgac
ttttttccctcatcgacgctcgatacaggtctggaaagcaaacgattattactacaaatg
catgttcaatgtcgcagctgaaagaaatgttaggagaacacggtacgagaatcgtttcca
ggcttacagagatggcgcagcccctgtttatcaaggcacgggatttcagaacgcgtaaaa
acgttcagcagaagctgcctgtaggaagaaatcgcaatgcgtagacgtgatccccttttt
gagctcacaccacgcgagaaagaaatattttttctcatcacaaaacaagggctgttgtat
gtagacatagctacaatgttgggcatttcgtataaaacagtgaaacatcatgcctgtcag
attctagtaaaacttgagatcacgtctcggtttgagctggcggtctgggcgtggcgaaat
ggaatagtgaggtgagaacgatgagtgaccacaaaccctgcccgttctgcgggggggagg
caaaaatttgcaaacaaaaaatatctctgagcaaagtggaagagtactgtgtttttaatg
tctactgtatggcttgtaaggccagaattaaggctgccaaagaatacgatatagcatgga
gtctctgggataggagggctggaaatggctaaggttttaatcatcatgctaaagtcatgg
gcaagtttaagtattgcttacactgtcattggaactatttatgatcataaggcaacattt
tcctaggcatgaagcttgcaagtgttttaacgcctatctttgccgctttgtgggctctag
tcagctaaaaaataaatcaaatacaaaccagaggagggccaatatgaacgaagtagataa
actcgcagctatagtagagctactcgtcagctaccatccgtcaggtttaatgattctcct
gggcgaacggccccctctgagcgcccagcaatgggcgagcctagtccagtcaatccaggc
tgtgccagatatagaaagagtcgatgcgagcgttaacatcgatgggttcttcaaccaggt
agcggttggagattcaatcatttcgtttatagaaaaactagggtcgtgggatgtcgttgt
cgaggcagttcagtcttttcgaagaattttcccgtcagattggaatctattt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search