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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|572547.3.peg.1155: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: Phage head, portal protein B
Translate Function Assignments


Context on contig NC_014011 from base 1143233 to 1155028 (11796 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1149 1144687 1143233 1455 -   5     Phage tail sheath protein FI locus|Amico_1114, protein_id|YP_003553962.1, gi|294102104, geneID|8964058
1150 1144859 1144671 189 - -17         Phage protein locus|Amico_1115, protein_id|YP_003553963.1, gi|294102105, geneID|8964059
1151 1145399 1144956 444 - 96         Phage protein locus|Amico_1116, protein_id|YP_003553964.1, gi|294102106, geneID|8964060
1152 1145954 1145400 555 - 0         Phage tail, component Z locus|Amico_1117, protein_id|YP_003553965.1, gi|294102107, geneID|8964061
1153 1146277 1145951 327 - -4         Phage protein locus|Amico_1118, protein_id|YP_003553966.1, gi|294102108, geneID|8964062
1154 1148557 1146632 1926 - 354 13     Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3 locus|Amico_1120, protein_id|YP_003553968.1, gi|294102110, InterPro:IPR006433, geneID|8964064
1155 1150022 1148538 1485 - -20       Phage head, portal protein B locus|Amico_1121, protein_id|YP_003553969.1, gi|294102111, InterPro:IPR006429, geneID|8964065
1156 1150204 1150016 189 - -7         Phage head, head-tail joining protein W locus|Amico_1122, protein_id|YP_003553970.1, gi|294102112, geneID|8964066
1157 1152088 1150223 1866 - 18 22     Phage terminase, large subunit locus|Amico_1123, protein_id|YP_003553971.1, gi|294102113, InterPro:IPR008866, geneID|8964067
1158 1152605 1152081 525 - -8         hypothetical protein locus|Amico_1124, protein_id|YP_003553972.1, gi|294102114, geneID|8964068
1159 1153527 1152964 564 - 358         Phage integrase locus|Amico_1125, protein_id|YP_003553973.1, gi|294102115, InterPro:IPR002104, geneID|8964069
1160 1153772 1153569 204 - 41         hypothetical protein locus|Amico_1126, protein_id|YP_003553974.1, gi|294102116, geneID|8964070
1161 1154645 1154151 495 - 378         hypothetical protein locus|Amico_1127, protein_id|YP_003553975.1, gi|294102117, geneID|8964071
1162 1155028 1154837 192 - 191         hypothetical protein locus|Amico_1129, protein_id|YP_003553977.1, gi|294102119, geneID|8964073

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1155 Phage head, portal protein B
MVRKAEEIKPNLVDRVISWFSPEKAYYRMAYRHAEQEMRNYNAARRDRFGSGWEPVNQKP
EETDAAFRDRIKARARDLERNSEIGNSVLLALERNVIGQGIRPQARIKNEDGSDNEDLNK
RLEDLWEEWAYKCEVTGQNTFYELQNMALRRMIVDGDTLALNVYDTSDFPFKLQMLESDA
LDTFHSYAKNKRVFSGVEVNAQYKPLAYWIYEDELSLPLRGRNFTSKRIPADRILHLFIK
KRPQQVRGMSYFAPIMGRVRDMDEYLDAELMASRIAACFAAFIKTKAPGDRIGRQSKTVD
GKRRETLEPGIMEYLLPGEDVSFSDPPRPNTKANEFIQMQLRLSGAGVGQSYEMISRDVS
QVNYSSARQAHLEDRQGFRVLQQFIKDHFCRPIWPEFVTACVLAGKVRIPDYFSNMSRYT
KSVWITPGWQWVDPLKEAAGTQKELDMGITSLSEICAARGKDWQEILDQICREQEYVEKI
GLKKEGGSVAKISK

MD5 = faffa128fac0b9c6df400fa4398654f4


  DNA Sequence

>fig|572547.3.peg.1155 Phage head, portal protein B
atggtaagaaaggctgaagaaataaaacctaatttagtagatcgcgttatatcgtggttt
agccctgaaaaggcatattatcgtatggcctatagacatgctgaacaagagatgcgcaac
tacaatgcagcaaggcgagatcgtttcggcagtggctgggaaccagtaaaccaaaagcca
gaagaaacagatgcagcttttcgagaccgaataaaggcaagggcaagagatcttgaacgc
aatagcgaaattgggaatagtgtgttgcttgctcttgagcggaacgtgataggacagggg
atacgcccccaagcccgaataaaaaacgaagatggttcagacaatgaagatctgaataag
cgccttgaagatctttgggaagaatgggcttataaatgtgaggttacaggacaaaacaca
ttttacgaattacaaaacatggcacttaggcgcatgatcgtagacggcgacacgttggcc
ttaaatgtttatgatacgagcgatttcccgtttaaattgcagatgcttgaatctgatgct
ctcgacaccttccactcttatgcaaaaaacaaacgtgtcttttctggggtagaagttaac
gctcagtacaagcccttagcctattggatctatgaagacgagctttccctgcctttaaga
ggacgaaactttacttctaagcgtattccggctgatcgtattttacacttgttcattaag
aaacgccctcagcaggtcagaggcatgtcgtattttgcgccgattatgggacgtgtacgc
gatatggatgaatatctcgatgctgagcttatggctagtcgaatagcggcatgtttcgca
gcttttattaaaacaaaagctcctggggatcggataggcagacagtcaaaaacagttgat
ggaaagcgcagagaaactttagagcctggaattatggaatatctgcttcccggcgaagac
gtttctttttctgatccgccacgaccaaacacaaaagcaaatgaatttattcagatgcaa
ctgcgcctttccggtgcgggggtcggtcagtcatacgagatgatctcgcgcgatgtatcg
caggtgaattattccagtgcccggcaagcgcaccttgaagatagacaaggctttagggtc
ttacagcaatttataaaagatcatttctgtaggccgatatggccagaatttgtaaccgct
tgtgtattagctggcaaggtacgtattcctgattatttttcgaacatgagccgatacaca
aagtctgtatggattaccccaggctggcagtgggtagaccctctaaaagaggccgcagga
actcagaaagagcttgatatgggtatcacatcgttatctgaaatatgtgcagccagaggt
aaggattggcaagaaatacttgaccagatatgccgtgagcaggaatacgtagaaaaaata
gggttaaaaaaggagggtggctcggttgccaaaattagcaaatag


  DNA with Flanking Sequence

>fig|572547.3.peg.1155 Phage head, portal protein B
atctttaaaaactgtcctcgcgaatatgctgatcagatttgtgctgagcgtaaaattacg
ctctatgaccagagaacgaaacgaacccgggaggtgtgggagcctatttctcaacacgca
caaaaccactttttagatgctgaagtttatgctgccgttgcagcagatgtgttgggtgtt
cgttatttatcagcagaggaaagggagggttttctcgagttctcgcactacgagcaagaa
agcaatagacaacccgacgaatggatcccgcgaaccgaggggggatggttacgagtttaa
gtagaaaggagggcgtccatgacgtatgaagaggagcttgctctttatgaagccgctttg
cgcgcgatactggcagggcaagagtaccaaataggaactatgcggcttaaaagggcaaat
attgattatgtgcagaatagaattgactacttacgccagcaagttgcgatgcagtctaca
gggtcaaggacatacgtgtcatggtaagaaaggctgaagaaataaaacctaatttagtag
atcgcgttatatcgtggtttagccctgaaaaggcatattatcgtatggcctatagacatg
ctgaacaagagatgcgcaactacaatgcagcaaggcgagatcgtttcggcagtggctggg
aaccagtaaaccaaaagccagaagaaacagatgcagcttttcgagaccgaataaaggcaa
gggcaagagatcttgaacgcaatagcgaaattgggaatagtgtgttgcttgctcttgagc
ggaacgtgataggacaggggatacgcccccaagcccgaataaaaaacgaagatggttcag
acaatgaagatctgaataagcgccttgaagatctttgggaagaatgggcttataaatgtg
aggttacaggacaaaacacattttacgaattacaaaacatggcacttaggcgcatgatcg
tagacggcgacacgttggccttaaatgtttatgatacgagcgatttcccgtttaaattgc
agatgcttgaatctgatgctctcgacaccttccactcttatgcaaaaaacaaacgtgtct
tttctggggtagaagttaacgctcagtacaagcccttagcctattggatctatgaagacg
agctttccctgcctttaagaggacgaaactttacttctaagcgtattccggctgatcgta
ttttacacttgttcattaagaaacgccctcagcaggtcagaggcatgtcgtattttgcgc
cgattatgggacgtgtacgcgatatggatgaatatctcgatgctgagcttatggctagtc
gaatagcggcatgtttcgcagcttttattaaaacaaaagctcctggggatcggataggca
gacagtcaaaaacagttgatggaaagcgcagagaaactttagagcctggaattatggaat
atctgcttcccggcgaagacgtttctttttctgatccgccacgaccaaacacaaaagcaa
atgaatttattcagatgcaactgcgcctttccggtgcgggggtcggtcagtcatacgaga
tgatctcgcgcgatgtatcgcaggtgaattattccagtgcccggcaagcgcaccttgaag
atagacaaggctttagggtcttacagcaatttataaaagatcatttctgtaggccgatat
ggccagaatttgtaaccgcttgtgtattagctggcaaggtacgtattcctgattattttt
cgaacatgagccgatacacaaagtctgtatggattaccccaggctggcagtgggtagacc
ctctaaaagaggccgcaggaactcagaaagagcttgatatgggtatcacatcgttatctg
aaatatgtgcagccagaggtaaggattggcaagaaatacttgaccagatatgccgtgagc
aggaatacgtagaaaaaatagggttaaaaaaggagggtggctcggttgccaaaattagca
aatagacaagaaaaagaacggttaaaagaaacttcgttgtatagagaatgtttaatcgaa
gaaagcaacattgatgagagctctcggacggtagaactctcattttcgtctgaggcaata
gtgattagaaagggatggttttcttcatggcgtgaagtgttgggacatgatgaagacaat
gttgacttaacacgcataaacgaaatgggggtgttgttgtggaatcataggagcgacgtt
cctataggtgcaatagagtctgcgtggcatgataaaaatgaccgcaagtgcagagccaag
gtttgctttgatgatgacgaggaaagtgaaaaaatttttaggaaggtcgtaaacaatacc
cttaaaggtgtttctgtcggttaccgtgtaacaaattgggaaatagttgatgaaggtgga
acaagcacatgtggccgattcacagggccttgcgagatagcgagaaagtgggaaccgctc
gaaatcagcatagtgtctgttccag


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
5 fig|572547.3.peg.1149 Phage tail sheath protein FI
13 fig|572547.3.peg.1154 Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3
22 fig|572547.3.peg.1157 Phage terminase, large subunit


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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