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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|572547.3.peg.1154: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3
Translate Function Assignments


Context on contig NC_014011 from base 1139818 to 1153527 (13710 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1145 1142250 1139818 2433 -       1: 1   Phage tail, tail length tape-measure protein locus|Amico_1111, protein_id|YP_003553959.1, gi|294102101, InterPro:IPR010090, geneID|8964055
1146 1142244 1142363 120 + -7         hypothetical protein  
1147 1142682 1142401 282 - 37         Phage tail protein GpE locus|Amico_1112, protein_id|YP_003553960.1, gi|294102102, geneID|8964056
1148 1143220 1142696 525 - 13         Phage major tail tube protein GpFII locus|Amico_1113, protein_id|YP_003553961.1, gi|294102103, InterPro:IPR006498, geneID|8964057
1149 1144687 1143233 1455 - 12         Phage tail sheath protein FI locus|Amico_1114, protein_id|YP_003553962.1, gi|294102104, geneID|8964058
1150 1144859 1144671 189 - -17         Phage protein locus|Amico_1115, protein_id|YP_003553963.1, gi|294102105, geneID|8964059
1151 1145399 1144956 444 - 96         Phage protein locus|Amico_1116, protein_id|YP_003553964.1, gi|294102106, geneID|8964060
1152 1145954 1145400 555 - 0         Phage tail, component Z locus|Amico_1117, protein_id|YP_003553965.1, gi|294102107, geneID|8964061
1153 1146277 1145951 327 - -4         Phage protein locus|Amico_1118, protein_id|YP_003553966.1, gi|294102108, geneID|8964062
1154 1148557 1146632 1926 - 354       Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3 locus|Amico_1120, protein_id|YP_003553968.1, gi|294102110, InterPro:IPR006433, geneID|8964064
1155 1150022 1148538 1485 - -20 10     Phage head, portal protein B locus|Amico_1121, protein_id|YP_003553969.1, gi|294102111, InterPro:IPR006429, geneID|8964065
1156 1150204 1150016 189 - -7         Phage head, head-tail joining protein W locus|Amico_1122, protein_id|YP_003553970.1, gi|294102112, geneID|8964066
1157 1152088 1150223 1866 - 18 4     Phage terminase, large subunit locus|Amico_1123, protein_id|YP_003553971.1, gi|294102113, InterPro:IPR008866, geneID|8964067
1158 1152605 1152081 525 - -8         hypothetical protein locus|Amico_1124, protein_id|YP_003553972.1, gi|294102114, geneID|8964068
1159 1153527 1152964 564 - 358         Phage integrase locus|Amico_1125, protein_id|YP_003553973.1, gi|294102115, InterPro:IPR002104, geneID|8964069

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1154 Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3
MPKLANRQEKERLKETSLYRECLIEESNIDESSRTVELSFSSEAIVIRKGWFSSWREVLG
HDEDNVDLTRINEMGVLLWNHRSDVPIGAIESAWHDKNDRKCRAKVCFDDDEESEKIFRK
VVNNTLKGVSVGYRVTNWEIVDEGGTSTCGRFTGPCEIARKWEPLEISIVSVPADATVGV
GRSLDEEGDNAMPKPNERADVVERVSPEDIDRVTRDERVRTAEILAMGQRFEMDLSEHIR
SGDSVEMVRKIVMDKLAEERKAVTPAVVTLDEKEKFRAAAQDALCIRGGVKFESDLAPGA
KELRSFSLRELAREALARAGESTKGDMMEMIGRALTTSDLPVILGNTANLSLMEGWENEE
ETWPVWVDDTGVVSDFKIHTAARVGELSELDEIPEGGEYRYGERAETFEQYQVAKFGKLF
AVTREAIVNDDIAALTDIPRQMGESARRKLGDIAYTALTSNPKMGDGKTLFHLDHGNLMT
AATISFTNFETTIEALGLAIAAMKGQKDVGGKQSLNIRPTFFIAPVALEATARRFFAQEQ
SPMTITLDTGASVAMGNGANPYAKDYFTLVFDPRLDDASANAWYLAARKGKSVRMYFLNG
VKAPYLEQRYGWSVDGTEYKVRIEAGAKAVDWRGLVKNPGA

MD5 = 9cad144143cab7bedb37f38a22e2eaea


  DNA Sequence

>fig|572547.3.peg.1154 Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3
ttgccaaaattagcaaatagacaagaaaaagaacggttaaaagaaacttcgttgtataga
gaatgtttaatcgaagaaagcaacattgatgagagctctcggacggtagaactctcattt
tcgtctgaggcaatagtgattagaaagggatggttttcttcatggcgtgaagtgttggga
catgatgaagacaatgttgacttaacacgcataaacgaaatgggggtgttgttgtggaat
cataggagcgacgttcctataggtgcaatagagtctgcgtggcatgataaaaatgaccgc
aagtgcagagccaaggtttgctttgatgatgacgaggaaagtgaaaaaatttttaggaag
gtcgtaaacaatacccttaaaggtgtttctgtcggttaccgtgtaacaaattgggaaata
gttgatgaaggtggaacaagcacatgtggccgattcacagggccttgcgagatagcgaga
aagtgggaaccgctcgaaatcagcatagtgtctgttccagcagatgcaactgttggtgta
ggtagaagtttagatgaggagggggataacgcaatgccaaagcctaacgagagagcggat
gtagtagagagagtctcaccagaagatatagaccgcgtaacaagagatgagcgtgttcgc
actgcggaaatattggcgatggggcaaagatttgaaatggatctcagcgagcatatccga
tctggcgattcggtggaaatggttcggaagatagtcatggataagctcgcagaagaaaga
aaagcagtaacgcctgccgttgttaccttagatgaaaaagaaaagttcagagctgcagca
caagatgcactgtgcattcgcggtggtgtcaaatttgaaagcgaccttgcgccaggcgcg
aaagagctcaggagtttttctttgcgagagcttgcgcgtgaggctctggctagggctggg
gagagcactaagggcgacatgatggagatgataggcagggctctcaccacttctgattta
cctgttattttgggcaatacggccaatttaagtcttatggagggctgggagaacgaagaa
gaaacttggcctgtctgggttgatgatactggtgtcgtcagcgactttaagatacacaca
gcggcccgagttggtgaattatctgagctggatgaaattcctgaaggcggggaatacagg
tatggcgaacgagctgagaccttcgaacagtatcaggtagcaaagtttgggaagttgttc
gccgttacgcgagaagctattgtaaatgacgatatcgcagcccttacagatattcctcga
cagatgggggaatcagcacgtcgtaaactgggtgatattgcatatacagcgctgaccagt
aatccaaagatgggtgatggaaaaaccctcttccatttagaccatggcaaccttatgaca
gcggcaactattagctttacgaatttcgaaaccacaattgaggcacttggcctagctatt
gcagccatgaaggggcaaaaagacgttggcggcaagcagagtctcaacatcaggccgaca
tttttcatagcacctgtggctctagaggcaactgcacggaggttctttgcccaggaacaa
tccccaatgacgattacgttagatactggggcaagtgtagcgatggggaatggcgcaaat
ccgtatgccaaagattactttaccttggtgtttgatccgaggcttgatgatgcaagcgca
aacgcatggtatttggcggcccgtaaagggaaatccgttcgcatgtactttttgaacggt
gtgaaggccccatacctagagcaaagatacggttggtcggttgatggtacagagtacaag
gtacgcatagaagctggcgcgaaagctgttgattggcgtggccttgttaaaaatcctggc
gcgtag


  DNA with Flanking Sequence

>fig|572547.3.peg.1154 Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3
tttttctgatccgccacgaccaaacacaaaagcaaatgaatttattcagatgcaactgcg
cctttccggtgcgggggtcggtcagtcatacgagatgatctcgcgcgatgtatcgcaggt
gaattattccagtgcccggcaagcgcaccttgaagatagacaaggctttagggtcttaca
gcaatttataaaagatcatttctgtaggccgatatggccagaatttgtaaccgcttgtgt
attagctggcaaggtacgtattcctgattatttttcgaacatgagccgatacacaaagtc
tgtatggattaccccaggctggcagtgggtagaccctctaaaagaggccgcaggaactca
gaaagagcttgatatgggtatcacatcgttatctgaaatatgtgcagccagaggtaagga
ttggcaagaaatacttgaccagatatgccgtgagcaggaatacgtagaaaaaatagggtt
aaaaaaggagggtggctcggttgccaaaattagcaaatagacaagaaaaagaacggttaa
aagaaacttcgttgtatagagaatgtttaatcgaagaaagcaacattgatgagagctctc
ggacggtagaactctcattttcgtctgaggcaatagtgattagaaagggatggttttctt
catggcgtgaagtgttgggacatgatgaagacaatgttgacttaacacgcataaacgaaa
tgggggtgttgttgtggaatcataggagcgacgttcctataggtgcaatagagtctgcgt
ggcatgataaaaatgaccgcaagtgcagagccaaggtttgctttgatgatgacgaggaaa
gtgaaaaaatttttaggaaggtcgtaaacaatacccttaaaggtgtttctgtcggttacc
gtgtaacaaattgggaaatagttgatgaaggtggaacaagcacatgtggccgattcacag
ggccttgcgagatagcgagaaagtgggaaccgctcgaaatcagcatagtgtctgttccag
cagatgcaactgttggtgtaggtagaagtttagatgaggagggggataacgcaatgccaa
agcctaacgagagagcggatgtagtagagagagtctcaccagaagatatagaccgcgtaa
caagagatgagcgtgttcgcactgcggaaatattggcgatggggcaaagatttgaaatgg
atctcagcgagcatatccgatctggcgattcggtggaaatggttcggaagatagtcatgg
ataagctcgcagaagaaagaaaagcagtaacgcctgccgttgttaccttagatgaaaaag
aaaagttcagagctgcagcacaagatgcactgtgcattcgcggtggtgtcaaatttgaaa
gcgaccttgcgccaggcgcgaaagagctcaggagtttttctttgcgagagcttgcgcgtg
aggctctggctagggctggggagagcactaagggcgacatgatggagatgataggcaggg
ctctcaccacttctgatttacctgttattttgggcaatacggccaatttaagtcttatgg
agggctgggagaacgaagaagaaacttggcctgtctgggttgatgatactggtgtcgtca
gcgactttaagatacacacagcggcccgagttggtgaattatctgagctggatgaaattc
ctgaaggcggggaatacaggtatggcgaacgagctgagaccttcgaacagtatcaggtag
caaagtttgggaagttgttcgccgttacgcgagaagctattgtaaatgacgatatcgcag
cccttacagatattcctcgacagatgggggaatcagcacgtcgtaaactgggtgatattg
catatacagcgctgaccagtaatccaaagatgggtgatggaaaaaccctcttccatttag
accatggcaaccttatgacagcggcaactattagctttacgaatttcgaaaccacaattg
aggcacttggcctagctattgcagccatgaaggggcaaaaagacgttggcggcaagcaga
gtctcaacatcaggccgacatttttcatagcacctgtggctctagaggcaactgcacgga
ggttctttgcccaggaacaatccccaatgacgattacgttagatactggggcaagtgtag
cgatggggaatggcgcaaatccgtatgccaaagattactttaccttggtgtttgatccga
ggcttgatgatgcaagcgcaaacgcatggtatttggcggcccgtaaagggaaatccgttc
gcatgtactttttgaacggtgtgaaggccccatacctagagcaaagatacggttggtcgg
ttgatggtacagagtacaaggtacgcatagaagctggcgcgaaagctgttgattggcgtg
gccttgttaaaaatcctggcgcgtagatagggggtgttctcatgagtaaagaggctacgt
ttttgcaagcgggaaaggtgataaattggactaatagtaccgaagctaatgtcgcggtag
gtgaagttatacctcttacaagtattgttggggttgctgtgaccaacattccgattggag
ctatcggagcggtatctttggaaggcatttaccaaatgccagcagataaaacaacaacgt
ttgctgtaggagacaaactatattgggatgccactgccggaaatctcacaaaaactgata
ctgcaaatgtgtatgctggtatatgtgtcgagcctaagaacgattctacagaaactgcac
tagtaaagctgggataaacggtgtctggatttaaagattttgtccagagtgatttatcta
ctttcttcaattcctcagagttcgcaacgtcccatgcaataaatggcaaagaaatacttt
gcgtgattgatgaaagcctcatacacgagcgccgcctacagtcaag


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
10 fig|572547.3.peg.1155 Phage head, portal protein B
4 fig|572547.3.peg.1157 Phage terminase, large subunit


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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