The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|572547.3.peg.1153: Aminobacterium colombiense DSM 12261

This feature in The SEED Viewer

NCBI Taxonomy Id: 572547

Current Assignment: Phage protein
Translate Function Assignments


Context on contig NC_014011 from base 1139818 to 1152088 (12271 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1145 1142250 1139818 2433 -       1: 1   Phage tail, tail length tape-measure protein locus|Amico_1111, protein_id|YP_003553959.1, gi|294102101, InterPro:IPR010090, geneID|8964055
1146 1142244 1142363 120 + -7         hypothetical protein  
1147 1142682 1142401 282 - 37         Phage tail protein GpE locus|Amico_1112, protein_id|YP_003553960.1, gi|294102102, geneID|8964056
1148 1143220 1142696 525 - 13         Phage major tail tube protein GpFII locus|Amico_1113, protein_id|YP_003553961.1, gi|294102103, InterPro:IPR006498, geneID|8964057
1149 1144687 1143233 1455 - 12         Phage tail sheath protein FI locus|Amico_1114, protein_id|YP_003553962.1, gi|294102104, geneID|8964058
1150 1144859 1144671 189 - -17         Phage protein locus|Amico_1115, protein_id|YP_003553963.1, gi|294102105, geneID|8964059
1151 1145399 1144956 444 - 96         Phage protein locus|Amico_1116, protein_id|YP_003553964.1, gi|294102106, geneID|8964060
1152 1145954 1145400 555 - 0         Phage tail, component Z locus|Amico_1117, protein_id|YP_003553965.1, gi|294102107, geneID|8964061
1153 1146277 1145951 327 - -4         Phage protein locus|Amico_1118, protein_id|YP_003553966.1, gi|294102108, geneID|8964062
1154 1148557 1146632 1926 - 354         Phage head, head-tail preconnector protease C / Phage head, scaffolding domain Nu3 locus|Amico_1120, protein_id|YP_003553968.1, gi|294102110, InterPro:IPR006433, geneID|8964064
1155 1150022 1148538 1485 - -20         Phage head, portal protein B locus|Amico_1121, protein_id|YP_003553969.1, gi|294102111, InterPro:IPR006429, geneID|8964065
1156 1150204 1150016 189 - -7         Phage head, head-tail joining protein W locus|Amico_1122, protein_id|YP_003553970.1, gi|294102112, geneID|8964066
1157 1152088 1150223 1866 - 18         Phage terminase, large subunit locus|Amico_1123, protein_id|YP_003553971.1, gi|294102113, InterPro:IPR008866, geneID|8964067

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|572547.3.peg.1153 Phage protein
MSGFKDFVQSDLSTFFNSSEFATSHAINGKEILCVIDESLIHERRLQSRAEAVDGVFSKE
IILYVKTVDIECEPLRGEEFRLDGSLFFVEEVGHIGGVLEITLVANES

MD5 = b40aad40fe7e317c2f7d06b5ca25cbde


  DNA Sequence

>fig|572547.3.peg.1153 Phage protein
gtgtctggatttaaagattttgtccagagtgatttatctactttcttcaattcctcagag
ttcgcaacgtcccatgcaataaatggcaaagaaatactttgcgtgattgatgaaagcctc
atacacgagcgccgcctacagtcaagagcagaagctgtagacggcgttttttctaaagag
ataattctttatgttaaaactgttgacattgaatgtgaacccttacgaggagaagagttc
aggctggacggatctcttttttttgtagaggaagtcgggcatattggcggtgttttagag
attacattggtggcgaatgaatcatga


  DNA with Flanking Sequence

>fig|572547.3.peg.1153 Phage protein
gcatgtactttttgaacggtgtgaaggccccatacctagagcaaagatacggttggtcgg
ttgatggtacagagtacaaggtacgcatagaagctggcgcgaaagctgttgattggcgtg
gccttgttaaaaatcctggcgcgtagatagggggtgttctcatgagtaaagaggctacgt
ttttgcaagcgggaaaggtgataaattggactaatagtaccgaagctaatgtcgcggtag
gtgaagttatacctcttacaagtattgttggggttgctgtgaccaacattccgattggag
ctatcggagcggtatctttggaaggcatttaccaaatgccagcagataaaacaacaacgt
ttgctgtaggagacaaactatattgggatgccactgccggaaatctcacaaaaactgata
ctgcaaatgtgtatgctggtatatgtgtcgagcctaagaacgattctacagaaactgcac
tagtaaagctgggataaacggtgtctggatttaaagattttgtccagagtgatttatcta
ctttcttcaattcctcagagttcgcaacgtcccatgcaataaatggcaaagaaatacttt
gcgtgattgatgaaagcctcatacacgagcgccgcctacagtcaagagcagaagctgtag
acggcgttttttctaaagagataattctttatgttaaaactgttgacattgaatgtgaac
ccttacgaggagaagagttcaggctggacggatctcttttttttgtagaggaagtcgggc
atattggcggtgttttagagattacattggtggcgaatgaatcatgatcgatttaaacgc
agaaaatgtagagcatgcaaaaaaagcattagcgggaattaagggaggggccgaaaaggc
cctttcccgctctttgaataaggcagtaaaaggaattagaacggacgctgttcggtcggc
gcgagaagaatatgttgctaaggcaaaagatatacggagtacgattcgtctttcaagctc
aaaacctaatacgttaagagttagcgcagtctcaagaggccagcggattgacctttacaa
gttcaagatccgtaaacagaacgcaaaacaaaaacggccggtgatggtgcaagttaaaaa
cgatggaaccatgaagcctttgttccgagcttttgttgcgactatgaaaagtggccatac
cagcattttcgagcgtgtcgggaaaaagcaacttccaatagtcgccctaacaggtccggc
tgctccgacaatgattggctcagaagcagttcgtacgtctatagaagaaaatgccttgcg
acgtttt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search