The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
The SEED


FIG search

Protein fig|565663.4.peg.1437: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: Mn-dependent transcriptional regulator MntR
Translate Function Assignments



Context on contig NZ_GG670326 from base 175405 to 187886 (12482 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1432 178107 175405 2703 -           NtrC family Transcriptional regulator, ATPase domain  
1433 179447 178170 1278 - 62     1: 12   ATP-dependent RNA helicase YfmL  
1434 180460 179447 1014 - -1         oxidoreductase, Gfo/Idh/MocA family  
1435 181204 180476 729 - 15     4: 20 16 18 5   Sugar/maltose fermentation stimulation protein homolog  
1436 181380 181709 330 + 175         conserved hypothetical protein  
1437 181883 182530 648 + 173         Mn-dependent transcriptional regulator MntR  
1438 182545 184071 1527 + 14     5: 9 4 19 13 15   Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)  
1439 186918 184120 2799 - 48     8: 6 11 2 17 21 8 1 14   Isoleucyl-tRNA synthetase (EC 6.1.1.5)  
1440 187886 187179 708 - 260     5: 2 7 1 10 3   Cell division initiation protein DivIVA  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1437 Mn-dependent transcriptional regulator MntR
MTPNREDYLKIILELGGDTTKVNNKQIVSSLDVSAASVSEMISKLVKEELVEHSPYQGVQ
LTASGLQKASSLIRKHRLWEVFLVEHLDYSWNEVHDDAEVLEHVTSEHLADHLENYLNHP
EHCPHGGSIPKKEEVVHEERRQTLESYPVGTKVRIARVLDEKELLDYLVTIDLNINEEYE
IVDIAAYEGPITIQNDRKKIPVSFKAASTIFVDKI

MD5 = 23d28cd99d2a58a572244edc4873fafd


  DNA Sequence

>fig|565663.4.peg.1437 Mn-dependent transcriptional regulator MntR
atgacaccaaatcgagaagattatttgaaaatcattttagaactaggcggagatacaacg
aaagtcaacaataaacaaatcgtatctagcctggatgtctcggctgcatctgtcagtgaa
atgatttctaaacttgtgaaagaagagcttgtagaacattccccttatcaaggtgtacaa
ttgactgcaagcggactgcaaaaagctagcagtttgattcgcaaacatcgtttatgggaa
gtttttttagttgaacatttagactatagctggaatgaagtccacgatgatgctgaagta
ttggaacatgtgacttcggaacatcttgcagatcatttagaaaactatttgaatcatcct
gaacattgtcctcatggaggatcgattcctaaaaaagaggaagtcgtccatgaagaacgc
cgacaaacactagaatcctatcctgtcggtacaaaagtgcgtatcgcacgagtgcttgat
gaaaaagaattgttggattacttagtcacaattgacctgaatatcaacgaagagtatgag
atcgttgatatcgcagcttatgaaggaccaatcactatccaaaatgatagaaagaaaata
cccgtcagcttcaaggcggccagcacgatttttgtcgataaaatataa


  DNA with Flanking Sequence

>fig|565663.4.peg.1437 Mn-dependent transcriptional regulator MntR
atctattttcttggttcactcgttgccgttctctcaagttggatttacttgaaaaagaaa
aaacaagcagaaaaatctgaaagactctcgaggtatcaaggtacatggttcttcagtgat
agccagcaaaaacaacaattacagattacatctgattacacgtttttgatcaacggtcag
tcacttggcacatctgtggtagaaatagatgaacagcgtttagtcgtacgtgatcaatac
ggtttttatcttgtcttttcttatcccgaacaaactctttatgatgaatctgcagatatc
tcgtataagttgacatctgaaaaatagacacctcccaatatatatctataaacgaaagta
tgagtcttctttctcgtctttcgttttttgttgtaaaaacgtccaaaaatcctttgtttt
ttatttagaaaaatagtcaattaacgttttttttgttacacttactaatgatggttttta
ccatgaaaggatgatcgaatatgacaccaaatcgagaagattatttgaaaatcattttag
aactaggcggagatacaacgaaagtcaacaataaacaaatcgtatctagcctggatgtct
cggctgcatctgtcagtgaaatgatttctaaacttgtgaaagaagagcttgtagaacatt
ccccttatcaaggtgtacaattgactgcaagcggactgcaaaaagctagcagtttgattc
gcaaacatcgtttatgggaagtttttttagttgaacatttagactatagctggaatgaag
tccacgatgatgctgaagtattggaacatgtgacttcggaacatcttgcagatcatttag
aaaactatttgaatcatcctgaacattgtcctcatggaggatcgattcctaaaaaagagg
aagtcgtccatgaagaacgccgacaaacactagaatcctatcctgtcggtacaaaagtgc
gtatcgcacgagtgcttgatgaaaaagaattgttggattacttagtcacaattgacctga
atatcaacgaagagtatgagatcgttgatatcgcagcttatgaaggaccaatcactatcc
aaaatgatagaaagaaaatacccgtcagcttcaaggcggccagcacgatttttgtcgata
aaatataaaggagtgtatctacatgtctaatgaaaaaaatgtattgtttacgatattcgg
cggcacaggtgacctagcccaacgtaaattgtacccgtctttgttccgcctttacagaaa
aggaaatttaggcgagcattttgccgtgattggaaccgctcgccgtccttggagcgatga
acactaccgtgaagttgtcaaagaaacgatccgtgcattgaatccttctgatgaagaagc
aactacttttgctagtcatttttactaccaatcccatgatgtaaatgattcaacacatta
tcaaacattaaaagaattgtctgaccgattagatggacactatcagttaaacggcaatcg
cgtctattatttggccatggcacctcaatttttcggaacgatcgtttctcatttaaaatc
acaaaacattatgacaaaaaatggcttcaatcgtttgattatagaaaaaccgtttggatc
ggattaccaatctgctttcgaattgaat


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search