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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|565663.4.peg.1433: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: ATP-dependent RNA helicase YfmL
Translate Function Assignments


Context on contig NZ_GG670326 from base 173019 to 186918 (13900 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1429 174479 173019 1461 -           PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107         PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28         PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151         NtrC family Transcriptional regulator, ATPase domain  
1433 179447 178170 1278 - 62   1: 11   ATP-dependent RNA helicase YfmL  
1434 180460 179447 1014 - -1 6     oxidoreductase, Gfo/Idh/MocA family  
1435 181204 180476 729 - 15     4: 15 2 12 16   Sugar/maltose fermentation stimulation protein homolog  
1436 181380 181709 330 + 175         conserved hypothetical protein  
1437 181883 182530 648 + 173         Mn-dependent transcriptional regulator MntR  
1438 182545 184071 1527 + 14     5: 9 3 5 14 4   Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)  
1439 186918 184120 2799 - 48     8: 6 18 1 7 10 8 17 13   Isoleucyl-tRNA synthetase (EC 6.1.1.5)  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
ATP-dependent_RNA_helicases,_bacterial gjo ATP-dependent RNA helicase YfmL


  Protein Sequence

>fig|565663.4.peg.1433 ATP-dependent RNA helicase YfmL
MNEFVQVFPENWQKNYENKGFITPSLIQQAVFQPLSNKQSIVAISPTGSGKTLAYLWPLL
LNVEPGEASALVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKKKPE
ILIGTPGRILELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEYQLAFFS
ATADRSLESIEKITGKTFETIDVTAEDDSQKGLRHYFLRVPIRKKDEYLRRLTHIEDFQG
LIFFNQLTELGVMEEKLLYRGVPVGSLASDQNKLLRKAALEQFKKKKISALLTTDVAARG
LDITGLPYVVNAEVPLSEEAYLHRSGRTGRMGNEGTVITLVQDNNLRDLKRLLRPTNITL
EEIFLHGGKLQTDQPIKEDVATAANNKYKKSFPGKEQNPEHNKNKSRKKVKNKSKKERNK
GARRK

MD5 = d6fea6a59941daa45fd596310fbc2dd8


  DNA Sequence

>fig|565663.4.peg.1433 ATP-dependent RNA helicase YfmL
atgaacgaatttgtacaagtatttcccgaaaattggcagaaaaattatgagaataaagga
tttattacaccttctcttattcaacaggcagtttttcagccattaagcaataaacaaagc
atagtagccatctctccaacaggttcaggtaaaacactggcttatctttggccgttacta
ctaaacgtagagccaggtgaagcaagtgcgttggttatctttgcatcttctcaagaacta
gctattcaagtagcagatgttgcacgtgaatggggaaaagacaaagaattgaaagtccaa
tctttggtgggcggagcaaacgttaaacgacaaattgaaggtttgaagaaaaaaccagaa
atcttgattggtacaccaggaagaatattggaattgatgaaagctaaaaaaataaaagca
catcaagtgaaaacaatggtatttgatgaagcagaccagctatttgatgcggggaacagc
caaatcattgatcagattcttcatcaagctccgacagaatatcagctagcctttttttca
gcaacagcagatcgttcccttgaaagcattgaaaaaatcactgggaaaacgtttgagacg
atcgacgtgacagcagaagatgattctcaaaaaggcttgagacattactttttacgagtg
ccaatacgaaagaaagatgaatatctaagacgtctcactcacatagaagattttcaaggt
ctgattttctttaatcaactgactgaattaggtgtgatggaagaaaaattgctgtataga
ggggtacctgtaggaagcctggcctctgatcaaaacaagctgctccgaaaagcggcgttg
gaacaattcaaaaagaaaaagatcagcgcacttttgaccacagatgtggcggctagaggt
ttagatattacaggacttccttatgtcgtgaatgcagaagtgccgttaagtgaagaagct
tacttgcatcgttctggaagaactggtcgaatgggcaatgaaggaacagtgatcacactc
gtacaagataacaatttaagagatttgaaacgacttttacgtccgacaaacataacactt
gaagagatttttctgcacggaggaaagttacaaacggatcaaccaatcaaagaagatgta
gctaccgcagcgaataacaagtataagaaatcttttcctgggaaagaacaaaatccagag
cataacaaaaacaaatcaagaaaaaaagttaaaaataaatcaaaaaaagagagaaataaa
ggagcaaggcgcaaataa


  DNA with Flanking Sequence

>fig|565663.4.peg.1433 ATP-dependent RNA helicase YfmL
catttctcaggtggtgcattgatggatttaggtgtttaccttgtgtatgcaactgtcgct
tggtttggaatgccaaaagaagtccattatttcccaagaaagatttctactggtgtggat
ggtcttggatggggaatcttgcgttatgatactttcgatgtatcgatccaaccaggtaaa
atcggtgattcttatctgccatcagagatctattttgactcaggaacgctagtgatgaat
ggcgtcaatgcaatcgaacaagcagagtttcatgatcgggtacacgaagaaatcattgac
ttagcagtaacagctgcagaaaatccaatggcagatgaagcagaggattttgccaatgtc
atgactcatccgaaagatccagcttggggattattgtatgaagagtggatcgagctagct
agaaatgtgaaccaagtgatttatgatttaagaaaaaatggtggcatcaaattcgatgca
gataatgaggaagatttttaatgaacgaatttgtacaagtatttcccgaaaattggcaga
aaaattatgagaataaaggatttattacaccttctcttattcaacaggcagtttttcagc
cattaagcaataaacaaagcatagtagccatctctccaacaggttcaggtaaaacactgg
cttatctttggccgttactactaaacgtagagccaggtgaagcaagtgcgttggttatct
ttgcatcttctcaagaactagctattcaagtagcagatgttgcacgtgaatggggaaaag
acaaagaattgaaagtccaatctttggtgggcggagcaaacgttaaacgacaaattgaag
gtttgaagaaaaaaccagaaatcttgattggtacaccaggaagaatattggaattgatga
aagctaaaaaaataaaagcacatcaagtgaaaacaatggtatttgatgaagcagaccagc
tatttgatgcggggaacagccaaatcattgatcagattcttcatcaagctccgacagaat
atcagctagcctttttttcagcaacagcagatcgttcccttgaaagcattgaaaaaatca
ctgggaaaacgtttgagacgatcgacgtgacagcagaagatgattctcaaaaaggcttga
gacattactttttacgagtgccaatacgaaagaaagatgaatatctaagacgtctcactc
acatagaagattttcaaggtctgattttctttaatcaactgactgaattaggtgtgatgg
aagaaaaattgctgtatagaggggtacctgtaggaagcctggcctctgatcaaaacaagc
tgctccgaaaagcggcgttggaacaattcaaaaagaaaaagatcagcgcacttttgacca
cagatgtggcggctagaggtttagatattacaggacttccttatgtcgtgaatgcagaag
tgccgttaagtgaagaagcttacttgcatcgttctggaagaactggtcgaatgggcaatg
aaggaacagtgatcacactcgtacaagataacaatttaagagatttgaaacgacttttac
gtccgacaaacataacacttgaagagatttttctgcacggaggaaagttacaaacggatc
aaccaatcaaagaagatgtagctaccgcagcgaataacaagtataagaaatcttttcctg
ggaaagaacaaaatccagagcataacaaaaacaaatcaagaaaaaaagttaaaaataaat
caaaaaaagagagaaataaaggagcaaggcgcaaataagcgcctttttatgctatgatta
tgaaaacgggaacaaaattggttgccagaggagggattatgtgaaagaacgtcaagaaga
gatcttgcatctattgacagaaaaccaacaaggattgacagcaagtgatgtagctgagcg
cttgaatattgatcgaagcaatgcaagccgatatttaagcgaactgtataaggctcatca
tattgtaaaaaccgctggccgaccagtcgtttactccttgccaacggaaaaatcaaaatc
tgatgaagtacatgtcgactcttctacgcaagtgacttttgaaacgctcgttggagaaaa
tgattctttaaaagtcagcatacagcaggcaaaagcagcgattctttatccgccgcgggg
gctgcataccattatttttggagaaactggtacagggaagtcgatgtttgcggaatgtat
gtatcattttgcaatcgaatctgaaatgctttcagccgatgcgccatttgtttctttc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
gb|EEV62108.1 Enterococcus faecium Com15     helicase
gi|257837034 Enterococcus faecium Com15 NCBI   helicase
gi|257899122 Enterococcus faecium Com15 NCBI   helicase
ref|ZP_05678775.1 Enterococcus faecium Com15 RefSeq   helicase


  Links to Related Entries in Other Sites

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  Functional Coupling

Score Peg Function
6 fig|565663.4.peg.1434 oxidoreductase, Gfo/Idh/MocA family


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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