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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|565663.4.peg.1430: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Translate Function Assignments


Context on contig NZ_GG670326 from base 169127 to 180460 (11334 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1423 169127 170266 1140 +           Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123         DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67 8     PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107       PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28 30     PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151 10     NtrC family Transcriptional regulator, ATPase domain  
1433 179447 178170 1278 - 62     1: 1   ATP-dependent RNA helicase YfmL  
1434 180460 179447 1014 - -1         oxidoreductase, Gfo/Idh/MocA family  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
MEDQQNLEAIMGLIMFGGNAKSDAMEAIAAAKIGDFELADRKIADAEESLIQAHHAQTDM
LTQEAQGNHMQVTLLTVHSQDHLMTSIAFTDLAKEIIELYRRVYSE

MD5 = dad9e0229d73340f7bd8f62f62bc21dc


  DNA Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
gtggaagatcaacaaaatctagaagccatcatgggactcatcatgtttggcggtaatgca
aagagcgacgcaatggaagcgattgcggctgctaaaatcggtgatttcgagttagcggat
agaaaaatcgctgatgcagaagaatcacttatacaagcacatcatgcacaaacagacatg
ttgacacaagaagcacaaggaaatcatatgcaagtgacgttattgactgttcatagtcaa
gatcatttaatgacgtctattgcgtttactgatttagcaaaagaaatcatcgaactttat
cgtcgcgtatacagcgaataa


  DNA with Flanking Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
taaacacactaatcatactgtttacacactggatatcagtgtgcgcactatataaaagag
ctaaaaagcatgaaaacgctattttagctctttttttcttggcatgcttcttgcattata
taaaagtgtaaaaacaataaaaggagtgttaaaaatggcaaaaaaaacaattatgttagt
ttgttcagcagggatgagtacgagtttattggtcacaaaaatgcaaaaagcagcggaaga
aaaaggaatggaagctgatatttttgctgtttctgcctcagatgcagataataatttaga
atctaagaatgtcgatgttttattattaggtcctcaagtacgtttcatgaaagctcaatt
cgaacaaaaacttgcgcctaaaggtattccgttagatgtcatcaatatgcaggactatgg
catgatgaatggagaaaaagtacttgcacaagcagaaaatctaatgaaataaatcaagta
tgcagttgggggataacaacgtggaagatcaacaaaatctagaagccatcatgggactca
tcatgtttggcggtaatgcaaagagcgacgcaatggaagcgattgcggctgctaaaatcg
gtgatttcgagttagcggatagaaaaatcgctgatgcagaagaatcacttatacaagcac
atcatgcacaaacagacatgttgacacaagaagcacaaggaaatcatatgcaagtgacgt
tattgactgttcatagtcaagatcatttaatgacgtctattgcgtttactgatttagcaa
aagaaatcatcgaactttatcgtcgcgtatacagcgaataaatacaacttcttttttgaa
cggaagaagaaaaatttttgaacggattttttattttgttataaaaagaactctctttat
ataaaaaacttataggaggaagtaaaaaatgaacggactaacaagttggatggagaaata
catcctgccggttgccgcaaaaatcggagcgcaaaaacatttagttgctttgcgtgatgc
ttttatcggcacactgcccgcaacaatggcgggatcagtcgctgtaatgatcaatgcaat
tattcgagatttaccgcaacagtttaacagtacctacgctgacagtttagcagcagacaa
aggaatctttgccgtattgaatgtcatcatcggaatcaatggttttgtctggaacggtac
actagcaatcgccggattgatttttgccttttcttgggggtataatcttgcccgagctta
tggagtaaatgatctagctggggggatcgttggtctagctaccttgattcaaggtatttc
c


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
8 fig|565663.4.peg.1429 PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
30 fig|565663.4.peg.1431 PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
10 fig|565663.4.peg.1432 NtrC family Transcriptional regulator, ATPase domain


  Attributes

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Link Explains Key		 Value


  Protein Families

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