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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|565663.4.peg.1430: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Translate Function Assignments



Context on contig NZ_GG670326 from base 169127 to 180460 (11334 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1423 169127 170266 1140 +           Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123         DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67 8     PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107       PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28 30     PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151 10     NtrC family Transcriptional regulator, ATPase domain  
1433 179447 178170 1278 - 62     1: 1   ATP-dependent RNA helicase YfmL  
1434 180460 179447 1014 - -1         oxidoreductase, Gfo/Idh/MocA family  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
MEDQQNLEAIMGLIMFGGNAKSDAMEAIAAAKIGDFELADRKIADAEESLIQAHHAQTDM
LTQEAQGNHMQVTLLTVHSQDHLMTSIAFTDLAKEIIELYRRVYSE

MD5 = dad9e0229d73340f7bd8f62f62bc21dc


  DNA Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
gtggaagatcaacaaaatctagaagccatcatgggactcatcatgtttggcggtaatgca
aagagcgacgcaatggaagcgattgcggctgctaaaatcggtgatttcgagttagcggat
agaaaaatcgctgatgcagaagaatcacttatacaagcacatcatgcacaaacagacatg
ttgacacaagaagcacaaggaaatcatatgcaagtgacgttattgactgttcatagtcaa
gatcatttaatgacgtctattgcgtttactgatttagcaaaagaaatcatcgaactttat
cgtcgcgtatacagcgaataa


  DNA with Flanking Sequence

>fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
taaacacactaatcatactgtttacacactggatatcagtgtgcgcactatataaaagag
ctaaaaagcatgaaaacgctattttagctctttttttcttggcatgcttcttgcattata
taaaagtgtaaaaacaataaaaggagtgttaaaaatggcaaaaaaaacaattatgttagt
ttgttcagcagggatgagtacgagtttattggtcacaaaaatgcaaaaagcagcggaaga
aaaaggaatggaagctgatatttttgctgtttctgcctcagatgcagataataatttaga
atctaagaatgtcgatgttttattattaggtcctcaagtacgtttcatgaaagctcaatt
cgaacaaaaacttgcgcctaaaggtattccgttagatgtcatcaatatgcaggactatgg
catgatgaatggagaaaaagtacttgcacaagcagaaaatctaatgaaataaatcaagta
tgcagttgggggataacaacgtggaagatcaacaaaatctagaagccatcatgggactca
tcatgtttggcggtaatgcaaagagcgacgcaatggaagcgattgcggctgctaaaatcg
gtgatttcgagttagcggatagaaaaatcgctgatgcagaagaatcacttatacaagcac
atcatgcacaaacagacatgttgacacaagaagcacaaggaaatcatatgcaagtgacgt
tattgactgttcatagtcaagatcatttaatgacgtctattgcgtttactgatttagcaa
aagaaatcatcgaactttatcgtcgcgtatacagcgaataaatacaacttcttttttgaa
cggaagaagaaaaatttttgaacggattttttattttgttataaaaagaactctctttat
ataaaaaacttataggaggaagtaaaaaatgaacggactaacaagttggatggagaaata
catcctgccggttgccgcaaaaatcggagcgcaaaaacatttagttgctttgcgtgatgc
ttttatcggcacactgcccgcaacaatggcgggatcagtcgctgtaatgatcaatgcaat
tattcgagatttaccgcaacagtttaacagtacctacgctgacagtttagcagcagacaa
aggaatctttgccgtattgaatgtcatcatcggaatcaatggttttgtctggaacggtac
actagcaatcgccggattgatttttgccttttcttgggggtataatcttgcccgagctta
tggagtaaatgatctagctggggggatcgttggtctagctaccttgattcaaggtatttc
c


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0005351       F:sugar:hydrogen symporter activity
GO:0009401       P:phosphoenolpyruvate-dependent sugar phospho...
GO:0016020       C:membrane
GO:0016740       F:transferase activity
fig|333849.6.peg.4307 Enterococcus faecium DO FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|333849.6.peg.507 Enterococcus faecium DO FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|525279.3.peg.2375 Enterococcus faecium TX1330 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|529885.3.peg.1417 Enterococcus faecium E980 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|535205.4.peg.980 Enterococcus faecium E1071 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|535206.4.peg.1057 Enterococcus faecium E1162 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|547468.4.peg.954 Enterococcus faecium U0317 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565656.3.peg.1291 Enterococcus faecium 1,230,933 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565657.5.peg.887 Enterococcus faecium 1,231,502 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565658.4.peg.1459 Enterococcus faecium 1,231,501 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565660.4.peg.771 Enterococcus faecium 1,231,410 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565661.4.peg.1484 Enterococcus faecium 1,231,408 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565662.4.peg.2031 Enterococcus faecium Com12 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|565664.3.peg.626 Enterococcus faecium C68 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|645663.4.peg.561 Enterococcus faecium E1039 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
fig|702448.3.peg.352 Enterococcus faecalis PC1.1 FIG   PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
gb|EAN10716.1 Enterococcus faecium DO     Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
gb|EEI61350.1 Enterococcus faecium TX1330     PTS family lactose/cellobiose porter component IIA
gb|EEV42371.1 Enterococcus faecium 1,230,933     phosphotransferase system PTS protein
gb|EEV44735.1 Enterococcus faecium 1,231,502     phosphotransferase system PTS protein
gb|EEV48183.1 Enterococcus faecium 1,231,501     phosphotransferase system PTS protein
gb|EEV53197.1 Enterococcus faecium 1,231,410     phosphotransferase system PTS protein
gb|EEV56525.1 Enterococcus faecium 1,231,408     phosphotransferase system PTS protein
gb|EEV60107.1 Enterococcus faecium Com12     phosphotransferase system PTS protein
gb|EEV62105.1 Enterococcus faecium Com15     phosphotransferase system PTS protein
gi|227180378 Enterococcus faecium TX1330 NCBI   PTS family lactose/cellobiose porter component IIA
gi|227550477 Enterococcus faecium TX1330 NCBI   PTS family lactose/cellobiose porter component IIA
gi|257813613 Enterococcus faecium 1,230,933 NCBI   phosphotransferase system PTS protein
gi|257817407 Enterococcus faecium 1,231,502 NCBI   phosphotransferase system PTS protein
gi|257821049 Enterococcus faecium 1,231,501 NCBI   phosphotransferase system PTS protein
gi|257826571 Enterococcus faecium 1,231,410 NCBI   phosphotransferase system PTS protein
gi|257829918 Enterococcus faecium 1,231,408 NCBI   phosphotransferase system PTS protein
gi|257833686 Enterococcus faecium Com12 NCBI   phosphotransferase system PTS protein
gi|257837031 Enterococcus faecium Com15 NCBI   phosphotransferase system PTS protein
gi|257879385 Enterococcus faecium 1,230,933 NCBI   phosphotransferase system PTS protein
gi|257881749 Enterococcus faecium 1,231,502 NCBI   phosphotransferase system PTS protein
gi|257885197 Enterococcus faecium 1,231,501 NCBI   phosphotransferase system PTS protein
gi|257890211 Enterococcus faecium 1,231,410 NCBI   phosphotransferase system PTS protein
gi|257893539 Enterococcus faecium 1,231,408 NCBI   phosphotransferase system PTS protein
gi|257897121 Enterococcus faecium Com12 NCBI   phosphotransferase system PTS protein
gi|257899119 Enterococcus faecium Com15 NCBI   phosphotransferase system PTS protein
gi|258615795 Enterococcus faecium DO NCBI   PTS system, IIA component
gi|68196287 Enterococcus faecium DO NCBI   Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
gi|69244696 Enterococcus faecium DO NCBI   Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
img|638350836 Enterococcus faecium DO IMG   Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
ref|ZP_00602960.1 Enterococcus faecium DO RefSeq   Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
ref|ZP_03980526.1 Enterococcus faecium TX1330 RefSeq   PTS family lactose/cellobiose porter component IIA
ref|ZP_05659038.1 Enterococcus faecium 1,230,933 RefSeq   phosphotransferase system PTS protein
ref|ZP_05661402.1 Enterococcus faecium 1,231,502 RefSeq   phosphotransferase system PTS protein
ref|ZP_05664850.1 Enterococcus faecium 1,231,501 RefSeq   phosphotransferase system PTS protein
ref|ZP_05669864.1 Enterococcus faecium 1,231,410 RefSeq   phosphotransferase system PTS protein
ref|ZP_05673192.1 Enterococcus faecium 1,231,408 RefSeq   phosphotransferase system PTS protein
ref|ZP_05676774.1 Enterococcus faecium Com12 RefSeq   phosphotransferase system PTS protein
ref|ZP_05678772.1 Enterococcus faecium Com15 RefSeq   phosphotransferase system PTS protein
ref|ZP_05713565.1 Enterococcus faecium DO RefSeq   PTS system, IIA component
tr|C2H887 Enterococcus faecium TX1330 TrEMBL   PTS family lactose/cellobiose porter component IIA
tr|Q3Y2J6 Enterococcus faecium DO TrEMBL   Phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit


  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
8 fig|565663.4.peg.1429 PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
30 fig|565663.4.peg.1431 PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
10 fig|565663.4.peg.1432 NtrC family Transcriptional regulator, ATPase domain


  Attributes

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  Protein Families

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