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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|565663.4.peg.1429: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Translate Function Assignments


Context on contig NZ_GG670326 from base 167577 to 180460 (12884 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1421 167577 168230 654 +           hypothetical protein  
1422 168367 169017 651 + 136         Hypothetical secreted protein  
1423 169127 170266 1140 + 109         Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123 4     DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67       PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107 11     PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28 12     PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151         NtrC family Transcriptional regulator, ATPase domain  
1433 179447 178170 1278 - 62 4 1: 1   ATP-dependent RNA helicase YfmL  
1434 180460 179447 1014 - -1         oxidoreductase, Gfo/Idh/MocA family  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1429 PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
MNGLTSWMEKYILPVAAKIGAQKHLVALRDAFIGTLPATMAGSVAVMINAIIRDLPQQFN
STYADSLAADKGIFAVLNVIIGINGFVWNGTLAIAGLIFAFSWGYNLARAYGVNDLAGGI
VGLATLIQGISFGPALSAALDVNVPSNVADAINSSEIGATIADGTLSVGLWGWLKLDHLN
GNAYFTVMIMGAISVIIFCKLMLANITIKMPDSVPPAVSKAFAAILPATIALYVIAIINY
IVGRVADGQLIIDLVQKYIAEPFLGLSQGLGAVLIVTVFVQVFWFFGIHGPNVLAPVLEG
IWGQAQLINIDIFQKGYNGKTGTPAVLDAIEDGKAYMWVRGSFDAFAWFGGSGGTIVLLI
AILIFSKRADYLTVAKLSIGPGIFNINEPVMFGLPIVLNAIMFIPFLIAPVVATAIGWLA
TYFGLVAPVSQQVTWVVPPFLLSFLATGADWRAPIVTLVCMVVTFLIWAPFVISANKMDP
AAGEQQ

MD5 = 5fde2701e7afbad69efba62eef34e912


  DNA Sequence

>fig|565663.4.peg.1429 PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
atgaacggactaacaagttggatggagaaatacatcctgccggttgccgcaaaaatcgga
gcgcaaaaacatttagttgctttgcgtgatgcttttatcggcacactgcccgcaacaatg
gcgggatcagtcgctgtaatgatcaatgcaattattcgagatttaccgcaacagtttaac
agtacctacgctgacagtttagcagcagacaaaggaatctttgccgtattgaatgtcatc
atcggaatcaatggttttgtctggaacggtacactagcaatcgccggattgatttttgcc
ttttcttgggggtataatcttgcccgagcttatggagtaaatgatctagctggggggatc
gttggtctagctaccttgattcaaggtatttcctttggtccagcattatcagcagcatta
gatgtgaatgtcccttcaaatgtcgcagatgcaatcaatagttctgagattggtgcaacg
attgcagatggcacactgtcagttggattatggggttggctgaaactagatcatttgaat
ggaaacgcttattttacagttatgatcatgggggcaatttcagtcattattttttgtaaa
ttgatgcttgctaacattacgatcaaaatgcctgattcagtaccaccagcagtatctaaa
gcatttgcagccattttaccagcgacgatcgctttatacgtcattgctattatcaattat
atcgtaggtcgtgtagctgatgggcaactaatcatcgatttggtgcaaaaatatattgca
gaaccattcctaggattatcccaagggttgggagcagtattgatcgtcacagtgtttgtt
caagtattctggttctttggtattcatggaccaaatgtattggcaccagtgctagaggga
atctggggacaagcacaactaatcaatattgatattttccaaaaaggttataacggaaaa
actggtacaccagccgtgttagacgcaatcgaagatggaaaagcttatatgtgggtccgt
ggatcgttcgatgcttttgcatggtttggcggatcaggtggaacgatcgtcttactgata
gctatcttgattttctctaaacgagcggattatttaacagtagctaaattatccattgga
cctggtattttcaatatcaacgagccagtgatgtttggtctgccgatcgtattgaatgcc
atcatgttcatcccattcttgattgctccagtagttgcgacagctatcggttggttagca
acttactttggacttgtagcaccagtttcgcaacaagttacatgggtagtaccgccgttc
ttattgtcattcttagcaacaggagcggattggcgagcaccaatcgtaacgttggtatgt
atggtcgtgactttcttgatttgggcaccgtttgtcatttctgcaaacaaaatggaccct
gccgcaggcgaacaacaataa


  DNA with Flanking Sequence

>fig|565663.4.peg.1429 PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
atggagaaaaagtacttgcacaagcagaaaatctaatgaaataaatcaagtatgcagttg
ggggataacaacgtggaagatcaacaaaatctagaagccatcatgggactcatcatgttt
ggcggtaatgcaaagagcgacgcaatggaagcgattgcggctgctaaaatcggtgatttc
gagttagcggatagaaaaatcgctgatgcagaagaatcacttatacaagcacatcatgca
caaacagacatgttgacacaagaagcacaaggaaatcatatgcaagtgacgttattgact
gttcatagtcaagatcatttaatgacgtctattgcgtttactgatttagcaaaagaaatc
atcgaactttatcgtcgcgtatacagcgaataaatacaacttcttttttgaacggaagaa
gaaaaatttttgaacggattttttattttgttataaaaagaactctctttatataaaaaa
cttataggaggaagtaaaaaatgaacggactaacaagttggatggagaaatacatcctgc
cggttgccgcaaaaatcggagcgcaaaaacatttagttgctttgcgtgatgcttttatcg
gcacactgcccgcaacaatggcgggatcagtcgctgtaatgatcaatgcaattattcgag
atttaccgcaacagtttaacagtacctacgctgacagtttagcagcagacaaaggaatct
ttgccgtattgaatgtcatcatcggaatcaatggttttgtctggaacggtacactagcaa
tcgccggattgatttttgccttttcttgggggtataatcttgcccgagcttatggagtaa
atgatctagctggggggatcgttggtctagctaccttgattcaaggtatttcctttggtc
cagcattatcagcagcattagatgtgaatgtcccttcaaatgtcgcagatgcaatcaata
gttctgagattggtgcaacgattgcagatggcacactgtcagttggattatggggttggc
tgaaactagatcatttgaatggaaacgcttattttacagttatgatcatgggggcaattt
cagtcattattttttgtaaattgatgcttgctaacattacgatcaaaatgcctgattcag
taccaccagcagtatctaaagcatttgcagccattttaccagcgacgatcgctttatacg
tcattgctattatcaattatatcgtaggtcgtgtagctgatgggcaactaatcatcgatt
tggtgcaaaaatatattgcagaaccattcctaggattatcccaagggttgggagcagtat
tgatcgtcacagtgtttgttcaagtattctggttctttggtattcatggaccaaatgtat
tggcaccagtgctagagggaatctggggacaagcacaactaatcaatattgatattttcc
aaaaaggttataacggaaaaactggtacaccagccgtgttagacgcaatcgaagatggaa
aagcttatatgtgggtccgtggatcgttcgatgcttttgcatggtttggcggatcaggtg
gaacgatcgtcttactgatagctatcttgattttctctaaacgagcggattatttaacag
tagctaaattatccattggacctggtattttcaatatcaacgagccagtgatgtttggtc
tgccgatcgtattgaatgccatcatgttcatcccattcttgattgctccagtagttgcga
cagctatcggttggttagcaacttactttggacttgtagcaccagtttcgcaacaagtta
catgggtagtaccgccgttcttattgtcattcttagcaacaggagcggattggcgagcac
caatcgtaacgttggtatgtatggtcgtgactttcttgatttgggcaccgtttgtcattt
ctgcaaacaaaatggaccctgccgcaggcgaacaacaataagatgaatctgaggagcggg
acgctttaagtttcgttcctcataatgaattttcgaggaggaactgaaatgatttcaatt
gccagtgcaatgcaacaagatgcaatcaaagaattgttagaaggatacaatgaagaagga
atgacatttacgtttaaagaaaaacaaggaatcaaaatgttctttgaaacaagtgcagaa
gatccggaagctgcggctaaaaaagcaaaggaactaatcaaagcacagccttggggaaca
gtcctttattttcagtcaacagctgtttaagaaaatggttcaaaaagataggatggttga
tatgataaaaaacggtttatttttatgtagtattggttctttgatcgtattgtatagttt
gaatccacattcgcaaaggtatgatttgtatagtatggtcacgggtcttttcctaacagg
attaggaatctacttcttcatgaaggggaaaaaaagagaagaagcaaaggagaaaaataa
c


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
4 fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
11 fig|565663.4.peg.1430 PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
12 fig|565663.4.peg.1431 PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
4 fig|565663.4.peg.1433 ATP-dependent RNA helicase YfmL


  Attributes

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Key
Link Explains Key		 Value


  Protein Families

No protein families found

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