The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|565663.4.peg.1428: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: FIG00628773: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG670326 from base 167577 to 178107 (10531 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1421 167577 168230 654 +           hypothetical protein  
1422 168367 169017 651 + 136         Hypothetical secreted protein  
1423 169127 170266 1140 + 109         Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123         DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67         PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107         PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28         PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151         NtrC family Transcriptional regulator, ATPase domain  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1428 FIG00628773: hypothetical protein
MISIASAMQQDAIKELLEGYNEEGMTFTFKEKQGIKMFFETSAEDPEAAAKKAKELIKAQ
PWGTVLYFQSTAV

MD5 = 9230c73084c2cf5814063b113a77ae7e


  DNA Sequence

>fig|565663.4.peg.1428 FIG00628773: hypothetical protein
atgatttcaattgccagtgcaatgcaacaagatgcaatcaaagaattgttagaaggatac
aatgaagaaggaatgacatttacgtttaaagaaaaacaaggaatcaaaatgttctttgaa
acaagtgcagaagatccggaagctgcggctaaaaaagcaaaggaactaatcaaagcacag
ccttggggaacagtcctttattttcagtcaacagctgtttaa


  DNA with Flanking Sequence

>fig|565663.4.peg.1428 FIG00628773: hypothetical protein
cgatgcttttgcatggtttggcggatcaggtggaacgatcgtcttactgatagctatctt
gattttctctaaacgagcggattatttaacagtagctaaattatccattggacctggtat
tttcaatatcaacgagccagtgatgtttggtctgccgatcgtattgaatgccatcatgtt
catcccattcttgattgctccagtagttgcgacagctatcggttggttagcaacttactt
tggacttgtagcaccagtttcgcaacaagttacatgggtagtaccgccgttcttattgtc
attcttagcaacaggagcggattggcgagcaccaatcgtaacgttggtatgtatggtcgt
gactttcttgatttgggcaccgtttgtcatttctgcaaacaaaatggaccctgccgcagg
cgaacaacaataagatgaatctgaggagcgggacgctttaagtttcgttcctcataatga
attttcgaggaggaactgaaatgatttcaattgccagtgcaatgcaacaagatgcaatca
aagaattgttagaaggatacaatgaagaaggaatgacatttacgtttaaagaaaaacaag
gaatcaaaatgttctttgaaacaagtgcagaagatccggaagctgcggctaaaaaagcaa
aggaactaatcaaagcacagccttggggaacagtcctttattttcagtcaacagctgttt
aagaaaatggttcaaaaagataggatggttgatatgataaaaaacggtttatttttatgt
agtattggttctttgatcgtattgtatagtttgaatccacattcgcaaaggtatgatttg
tatagtatggtcacgggtcttttcctaacaggattaggaatctacttcttcatgaagggg
aaaaaaagagaagaagcaaaggagaaaaataactaatggaaatcacaaaaaaattaaata
ttccagcgtcgtttttttacgataaagttatggattctgttcttttcgatgtacgtaaag
cgaccggcaaatcagtgaccagaaaacagctgaaaaatttggagtacgtcaaacaattct
cgcaaaataaccgggctcgtataaaaatcgaagaagtcattgaaaaccagtcttataagt
ttcgtacatcgacaacgaagaatgaattcgttgttcattatcaaatcaaaccagtagacg
attcgacctgtgaggttcatta


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|525279.3.peg.2377 Enterococcus faecium TX1330 FIG   FIG00628773: hypothetical protein
fig|529885.3.peg.2162 Enterococcus faecium E980 FIG   FIG00628773: hypothetical protein
fig|565659.3.peg.2010 Enterococcus faecium 1,141,733 FIG   FIG00628773: hypothetical protein
fig|565662.4.peg.2029 Enterococcus faecium Com12 FIG   FIG00628773: hypothetical protein
fig|702448.3.peg.350 Enterococcus faecalis PC1.1 FIG   FIG00628773: hypothetical protein
gb|EEI61352.1 Enterococcus faecium TX1330     conserved hypothetical protein
gb|EEV51492.1 Enterococcus faecium 1,141,733     conserved hypothetical protein
gb|EEV60105.1 Enterococcus faecium Com12     conserved hypothetical protein
gb|EEV62103.1 Enterococcus faecium Com15     conserved hypothetical protein
gi|227180380 Enterococcus faecium TX1330 NCBI   conserved hypothetical protein
gi|227550479 Enterococcus faecium TX1330 NCBI   conserved hypothetical protein
gi|257824560 Enterococcus faecium 1,141,733 NCBI   conserved hypothetical protein
gi|257833684 Enterococcus faecium Com12 NCBI   conserved hypothetical protein
gi|257837029 Enterococcus faecium Com15 NCBI   conserved hypothetical protein
gi|257888506 Enterococcus faecium 1,141,733 NCBI   conserved hypothetical protein
gi|257897119 Enterococcus faecium Com12 NCBI   conserved hypothetical protein
gi|257899117 Enterococcus faecium Com15 NCBI   conserved hypothetical protein
ref|ZP_03980528.1 Enterococcus faecium TX1330 RefSeq   conserved hypothetical protein
ref|ZP_05668159.1 Enterococcus faecium 1,141,733 RefSeq   conserved hypothetical protein
ref|ZP_05676772.1 Enterococcus faecium Com12 RefSeq   conserved hypothetical protein
ref|ZP_05678770.1 Enterococcus faecium Com15 RefSeq   conserved hypothetical protein
tr|C2H889 Enterococcus faecium TX1330 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search