The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|565663.4.peg.1426: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
Translate Function Assignments



Context on contig NZ_GG670326 from base 167577 to 178107 (10531 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1421 167577 168230 654 +           hypothetical protein  
1422 168367 169017 651 + 136         Hypothetical secreted protein  
1423 169127 170266 1140 + 109         Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123         DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67         PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107         PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28         PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151         NtrC family Transcriptional regulator, ATPase domain  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
MEITKKLNIPASFFYDKVMDSVLFDVRKATGKSVTRKQLKNLEYVKQFSQNNRARIKIEE
VIENQSYKFRTSTTKNEFVVHYQIKPVDDSTCEVHYTEKMESYGMLQKLNDMLLGTILMY
FKRRRFKKMLEMIEATY

MD5 = 79804c80bdc14fb112ff30e52cd98c3a


  DNA Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
atggaaatcacaaaaaaattaaatattccagcgtcgtttttttacgataaagttatggat
tctgttcttttcgatgtacgtaaagcgaccggcaaatcagtgaccagaaaacagctgaaa
aatttggagtacgtcaaacaattctcgcaaaataaccgggctcgtataaaaatcgaagaa
gtcattgaaaaccagtcttataagtttcgtacatcgacaacgaagaatgaattcgttgtt
cattatcaaatcaaaccagtagacgattcgacctgtgaggttcattacacagaaaaaatg
gagtcttatggcatgcttcaaaagttgaatgatatgcttttaggaacaatcttgatgtac
tttaagcggagacgtttcaaaaaaatgctagagatgatcgaagcaacgtattaa


  DNA with Flanking Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
tgaatctgaggagcgggacgctttaagtttcgttcctcataatgaattttcgaggaggaa
ctgaaatgatttcaattgccagtgcaatgcaacaagatgcaatcaaagaattgttagaag
gatacaatgaagaaggaatgacatttacgtttaaagaaaaacaaggaatcaaaatgttct
ttgaaacaagtgcagaagatccggaagctgcggctaaaaaagcaaaggaactaatcaaag
cacagccttggggaacagtcctttattttcagtcaacagctgtttaagaaaatggttcaa
aaagataggatggttgatatgataaaaaacggtttatttttatgtagtattggttctttg
atcgtattgtatagtttgaatccacattcgcaaaggtatgatttgtatagtatggtcacg
ggtcttttcctaacaggattaggaatctacttcttcatgaaggggaaaaaaagagaagaa
gcaaaggagaaaaataactaatggaaatcacaaaaaaattaaatattccagcgtcgtttt
tttacgataaagttatggattctgttcttttcgatgtacgtaaagcgaccggcaaatcag
tgaccagaaaacagctgaaaaatttggagtacgtcaaacaattctcgcaaaataaccggg
ctcgtataaaaatcgaagaagtcattgaaaaccagtcttataagtttcgtacatcgacaa
cgaagaatgaattcgttgttcattatcaaatcaaaccagtagacgattcgacctgtgagg
ttcattacacagaaaaaatggagtcttatggcatgcttcaaaagttgaatgatatgcttt
taggaacaatcttgatgtactttaagcggagacgtttcaaaaaaatgctagagatgatcg
aagcaacgtattaaaccagtgaaaaaatggtactatttagttattgaaaaatgaagtaag
ctagaagagatttttcagagggagcgaggtctttcctgagattcctcactagtttttttg
taggaaggggcagcaaaatgacaaaacaagtaagagagctagggggatcttcgattgagg
aaatgtttgctttagccacatatgcatttaatggggcagatacacctgaaaggagagaac
gttttcgtacacttgcggagaattcctggaattacggtttttttgatgaggaggatcggc
taacaagtcaagtcatggcgactccttttccagtgaatttttacggacaagagtatttaa
tggccggtattggctatgttgcttcttatcctgaagcaaggggacaaggcggaatcaatc
agatcatggaaaagatccttgaagattgccgtgatcgtaaagtaagcttatcttatctgg
cgccattctcctatcccttctatcggcgctatgg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|565658.4.peg.1463 Enterococcus faecium 1,231,501 FIG   DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
gb|EEV48187.1 Enterococcus faecium 1,231,501     conserved hypothetical protein
gb|EEV62101.1 Enterococcus faecium Com15     conserved hypothetical protein
gi|257821053 Enterococcus faecium 1,231,501 NCBI   conserved hypothetical protein
gi|257837027 Enterococcus faecium Com15 NCBI   conserved hypothetical protein
gi|257885201 Enterococcus faecium 1,231,501 NCBI   conserved hypothetical protein
gi|257899115 Enterococcus faecium Com15 NCBI   conserved hypothetical protein
ref|ZP_05664854.1 Enterococcus faecium 1,231,501 RefSeq   conserved hypothetical protein
ref|ZP_05678768.1 Enterococcus faecium Com15 RefSeq   conserved hypothetical protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search