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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|565663.4.peg.1426: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
Translate Function Assignments


Context on contig NZ_GG670326 from base 167577 to 178107 (10531 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1421 167577 168230 654 +           hypothetical protein  
1422 168367 169017 651 + 136         Hypothetical secreted protein  
1423 169127 170266 1140 + 109         Phage integrase  
rna.26 170408 170335 74 - 68         tRNA-Arg-CCT  
1424 170562 170726 165 + 153         FIG00627422: hypothetical protein  
1425 171979 170798 1182 - 71         conserved hypothetical protein  
1426 172516 172103 414 - 123         DNA-directed RNA polymerase specialized sigma subunit, sigma24-like  
1427 172698 172516 183 - -1         FIG00629913: hypothetical protein  
1428 172951 172730 222 - 31         FIG00628773: hypothetical protein  
1429 174479 173019 1461 - 67         PTS system, cellobiose-specific IIC component (EC 2.7.1.69)  
1430 174907 174587 321 - 107         PTS system, cellobiose-specific IIA component (EC 2.7.1.69)  
1431 175253 174936 318 - 28         PTS system, cellobiose-specific IIB component (EC 2.7.1.69)  
1432 178107 175405 2703 - 151         NtrC family Transcriptional regulator, ATPase domain  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
MEITKKLNIPASFFYDKVMDSVLFDVRKATGKSVTRKQLKNLEYVKQFSQNNRARIKIEE
VIENQSYKFRTSTTKNEFVVHYQIKPVDDSTCEVHYTEKMESYGMLQKLNDMLLGTILMY
FKRRRFKKMLEMIEATY

MD5 = 79804c80bdc14fb112ff30e52cd98c3a


  DNA Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
atggaaatcacaaaaaaattaaatattccagcgtcgtttttttacgataaagttatggat
tctgttcttttcgatgtacgtaaagcgaccggcaaatcagtgaccagaaaacagctgaaa
aatttggagtacgtcaaacaattctcgcaaaataaccgggctcgtataaaaatcgaagaa
gtcattgaaaaccagtcttataagtttcgtacatcgacaacgaagaatgaattcgttgtt
cattatcaaatcaaaccagtagacgattcgacctgtgaggttcattacacagaaaaaatg
gagtcttatggcatgcttcaaaagttgaatgatatgcttttaggaacaatcttgatgtac
tttaagcggagacgtttcaaaaaaatgctagagatgatcgaagcaacgtattaa


  DNA with Flanking Sequence

>fig|565663.4.peg.1426 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
tgaatctgaggagcgggacgctttaagtttcgttcctcataatgaattttcgaggaggaa
ctgaaatgatttcaattgccagtgcaatgcaacaagatgcaatcaaagaattgttagaag
gatacaatgaagaaggaatgacatttacgtttaaagaaaaacaaggaatcaaaatgttct
ttgaaacaagtgcagaagatccggaagctgcggctaaaaaagcaaaggaactaatcaaag
cacagccttggggaacagtcctttattttcagtcaacagctgtttaagaaaatggttcaa
aaagataggatggttgatatgataaaaaacggtttatttttatgtagtattggttctttg
atcgtattgtatagtttgaatccacattcgcaaaggtatgatttgtatagtatggtcacg
ggtcttttcctaacaggattaggaatctacttcttcatgaaggggaaaaaaagagaagaa
gcaaaggagaaaaataactaatggaaatcacaaaaaaattaaatattccagcgtcgtttt
tttacgataaagttatggattctgttcttttcgatgtacgtaaagcgaccggcaaatcag
tgaccagaaaacagctgaaaaatttggagtacgtcaaacaattctcgcaaaataaccggg
ctcgtataaaaatcgaagaagtcattgaaaaccagtcttataagtttcgtacatcgacaa
cgaagaatgaattcgttgttcattatcaaatcaaaccagtagacgattcgacctgtgagg
ttcattacacagaaaaaatggagtcttatggcatgcttcaaaagttgaatgatatgcttt
taggaacaatcttgatgtactttaagcggagacgtttcaaaaaaatgctagagatgatcg
aagcaacgtattaaaccagtgaaaaaatggtactatttagttattgaaaaatgaagtaag
ctagaagagatttttcagagggagcgaggtctttcctgagattcctcactagtttttttg
taggaaggggcagcaaaatgacaaaacaagtaagagagctagggggatcttcgattgagg
aaatgtttgctttagccacatatgcatttaatggggcagatacacctgaaaggagagaac
gttttcgtacacttgcggagaattcctggaattacggtttttttgatgaggaggatcggc
taacaagtcaagtcatggcgactccttttccagtgaatttttacggacaagagtatttaa
tggccggtattggctatgttgcttcttatcctgaagcaaggggacaaggcggaatcaatc
agatcatggaaaagatccttgaagattgccgtgatcgtaaagtaagcttatcttatctgg
cgccattctcctatcccttctatcggcgctatgg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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