The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|565663.4.peg.1413: Enterococcus faecium Com15

This feature in The SEED Viewer

NCBI Taxonomy Id: 565663

Current Assignment: FIG00631288: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG670326 from base 158219 to 169017 (10799 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1404 158380 158219 162 -           FIG00630198: hypothetical protein  
1405 158836 158672 165 - 291         FIG00632008: hypothetical protein  
1406 159110 158841 270 - 4         hypothetical protein  
1407 159871 159122 750 - 11         Phage replication initiation  
1408 160560 159874 687 - 2         Phage protein  
1409 161300 160566 735 - 5         Phage protein  
1410 161634 161293 342 - -8         FIG00627384: hypothetical protein  
1411 162510 161812 699 - 177         Uncharacterized phage-encoded protein-like  
1412 162565 163230 666 + 54         hypothetical protein  
1413 163498 163328 171 - 97         FIG00631288: hypothetical protein  
1414 163823 163485 339 - -14         FIG00628305: hypothetical protein  
1415 164042 163839 204 - 15         hypothetical protein  
1416 164839 164057 783 - 14         Phage antirepressor protein  
1417 164900 165520 621 + 60         hypothetical protein  
1418 166219 166061 159 - 540         hypothetical protein  
1419 166416 166231 186 - 11         cro  
1420 166720 167094 375 + 303         Phage transcriptional regulator, Cro/CI family  
1421 167577 168230 654 + 482         hypothetical protein  
1422 168367 169017 651 + 136         Hypothetical secreted protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|565663.4.peg.1413 FIG00631288: hypothetical protein
MGKFNRALVFSAPLIIYALGLWGSRQALIGTIVYMVWIFMGLDEAEYKTKKPVGRD

MD5 = 2c750d37eb0c9ff5b994f9140a832c9e


  DNA Sequence

>fig|565663.4.peg.1413 FIG00631288: hypothetical protein
atgggaaaatttaatagagcgctagtattcagcgcaccgctaatcatctacgctttagga
ctttggggaagcagacaagcgttgataggaacgattgtttacatggtttggatttttatg
gggctggatgaagctgagtacaaaacaaaaaagccagtcgggagggactga


  DNA with Flanking Sequence

>fig|565663.4.peg.1413 FIG00631288: hypothetical protein
caaagaatatgtcgaaagttcaaagttcttaacttacaccatgcttgctgaaagatttgg
aattagcaaaagctacttatctttaattttaaacggtaaaaagacttctgcagaagcaaa
cagaattatagattcgattatcactatgtacgaattgtaaagggaggaacagctaatgca
atatctagaagcaaaaatcccaattccagaaggctatgtaattatctcccaagtggatta
tgaggagttaaaaaaagctgatgatactggtagatggatgacgttgccagaagtgctaga
acggattaacagaaaatatgattggtttacttctagagttttaaagaacccaagatatag
aaatattatcgatatcgaaaaaaacaaaaatggatttgtctattatccagttgaaggaag
agacacatatctatttttaagaagtaaaacacttgaatttttagaaacaaatttttcgga
aatcttaaggaggcaagcggatgggaaaatttaatagagcgctagtattcagcgcaccgc
taatcatctacgctttaggactttggggaagcagacaagcgttgataggaacgattgttt
acatggtttggatttttatggggctggatgaagctgagtacaaaacaaaaaagccagtcg
ggagggactgactaatgaaaaaaagtttaatgactataaacgaaaaacaattgaaagaaa
attttaatgatctcatcaaagaatttgtaaaagaaactggagaatttcctaatcaaattc
atctagttgcggaggggcatagccagtatcaagctgtgaaatttgagatgaagaaacaaa
tctattgaatttagcagtacctctacttgtaagaacatttattgtaatgtttttttcgac
taaagattcatcgtatctaaaaaccaacgtagtaatttttgactcatacggtggaatggt
aataggtaatgacaacggaggaaattttgatagatcagcacctttttttaaagatttacc
agaatacgcacgtataccatgtggaagttcgtcatacattgattttaccgttacagaata
attatcaccaatcattgtaaaagcatttaaaggatcaggaattccagaaatcgaaaactc
aataattgtaacaggtaaagaactgttattt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search