The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|526218.6.peg.1362: Sebaldella termitidis ATCC 33386

This feature in The SEED Viewer

NCBI Taxonomy Id: 526218

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NC_013517 from base 1417974 to 1428171 (10198 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1353 1418465 1417974 492 -           hypothetical protein locus|Sterm_1324, protein_id|YP_003308121.1, gi|269119944, geneID|8596801
1354 1418855 1418565 291 - 99         hypothetical protein locus|Sterm_1325, protein_id|YP_003308122.1, gi|269119945, geneID|8596802
1355 1419169 1418873 297 - 17         hypothetical protein locus|Sterm_1326, protein_id|YP_003308123.1, gi|269119946, InterPro:IPR002048, geneID|8596803
1356 1419915 1419265 651 - 95         hypothetical protein locus|Sterm_1327, protein_id|YP_003308124.1, gi|269119947, geneID|8596804
1357 1420482 1419916 567 - 0         hypothetical protein locus|Sterm_1328, protein_id|YP_003308125.1, gi|269119948, geneID|8596805
1358 1420586 1420948 363 + 103     4: 1 2 5 8   DNA processing protein DprA  
1359 1421255 1422157 903 + 306     2: 9 7   Oxidoreductase, aldo/keto reductase family locus|Sterm_1330, protein_id|YP_003308126.1, gi|269119949, InterPro:IPR001395, geneID|8599616
1360 1422356 1422832 477 + 198         Auxin-binding protein, putative locus|Sterm_1331, protein_id|YP_003308127.1, gi|269119950, InterPro:IPR006045, InterPro:IPR013096, geneID|8596807
1361 1423128 1422967 162 - 134         hypothetical protein locus|Sterm_1332, protein_id|YP_003308128.1, gi|269119951, geneID|8596808
1362 1423335 1423153 183 - 24         hypothetical protein locus|Sterm_1333, protein_id|YP_003308129.1, gi|269119952, geneID|8596809
1363 1423945 1423499 447 - 163     4: 3 10 6 4   Transcriptional regulator, MarR family locus|Sterm_1334, protein_id|YP_003308130.1, gi|269119953, InterPro:IPR000835, geneID|8596810
1364 1424239 1424829 591 + 293         hypothetical protein locus|Sterm_1335, protein_id|YP_003308131.1, gi|269119954, geneID|8596811
1365 1425469 1424993 477 - 163         Acetyltransferase, GNAT family locus|Sterm_1336, protein_id|YP_003308132.1, gi|269119955, InterPro:IPR000182, geneID|8596812
1366 1425749 1426234 486 + 279         hypothetical protein locus|Sterm_1337, protein_id|YP_003308133.1, gi|269119956, geneID|8596813
1367 1426513 1426647 135 + 278         hypothetical protein  
1368 1426599 1427159 561 + -49         hypothetical protein locus|Sterm_1338, protein_id|YP_003308134.1, gi|269119957, geneID|8596814
1369 1427516 1427265 252 - 105         hypothetical protein locus|Sterm_1339, protein_id|YP_003308135.1, gi|269119958, geneID|8596815
1370 1428171 1427545 627 - 28         EpiH/GdmH-related protein locus|Sterm_1340, protein_id|YP_003308136.1, gi|269119959, InterPro:IPR003848, geneID|8596816

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|526218.6.peg.1362 hypothetical protein
MKKSILILTLCTTVSFMSLAENNYAVKIAKKTVPTATQKAVTYDSPEEIIERIQQEIKHK

MD5 = 43f23a2608de99aa08e36dc3583b385e


  DNA Sequence

>fig|526218.6.peg.1362 hypothetical protein
atgaaaaaatcaatattaattttaaccttatgcacaacagtatcttttatgtccttagct
gaaaataattatgcagttaaaatagctaaaaagacagtgcctactgctacacaaaaagca
gtaacctatgattcgccggaagaaataatagaaagaatacaacaagaaataaaacacaaa
taa


  DNA with Flanking Sequence

>fig|526218.6.peg.1362 hypothetical protein
gggtattcaggcaggaattattgcatatattaatatttcaagtgaaacaggagaagtgtt
tcagaaagatattgaagaagaatttaacataagacgttctacagcaactggtattctaaa
ttctttagaaaaaaacgatatgttaaaacgcgaatctgtttcatatgacaagcgcttaaa
aaaattagttttaacagaaaagtccaaccttttttgcaagaaaatccgtgaaacccttat
agcggatgagaaaaaattgactgaaaatcttacagcagaagaaatagaattttttttgaa
aattattgcaaaaatgatgaaaaacattatgtattaaaatattccatctaatattaaaga
tggttatttttcaaaacatattgttaggaacataactgttagcgcccgaatttaattcag
atattatcggctaataaatatacaagaccatacttatctcataacttttataataaaaaa
atttaacaggaggaaatactatgaaaaaatcaatattaattttaaccttatgcacaacag
tatcttttatgtccttagctgaaaataattatgcagttaaaatagctaaaaagacagtgc
ctactgctacacaaaaagcagtaacctatgattcgccggaagaaataatagaaagaatac
aacaagaaataaaacacaaataaatataatatttaggaggaaatactatgaaaaagacaa
tcttattttttactttattaactttagtttcttcagcttttgcagccgaaactatgataa
atcttaaatttactggacaaacacaatcaaaagaaactacaaaagatgaaagattagaag
aaatgatgagaagatatcagggagaataatactgaatctgtgtacatataaaaagaccgg
gataatccggtctttttatattattaatagataaagcagtaacaattttatatattttaa
aagcataaatataactgctccggaatatttatgcatccttatattattcatcttcataat
aaggaatatttgaatcctgcttatagaattttgggaattcaccatttacaaatacgccaa
ctttgtttgtatgaggataaataacaacatccggagaattatttgtatcaacatccaagt
aaactaacatctcattttctgatgagtttttcaatctatgtgc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search