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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|526218.6.peg.1358: Sebaldella termitidis ATCC 33386

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NCBI Taxonomy Id: 526218

Current Assignment: Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
Translate Function Assignments


Context on contig NC_013517 from base 1416136 to 1426234 (10099 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1351 1416681 1416136 546 -           TPR domain protein locus|Sterm_1321, protein_id|YP_003308118.1, gi|269119941, InterPro:IPR001440, InterPro:IPR006597, InterPro:IPR011716, InterPro:IPR013026, geneID|8596798
1352 1417489 1416779 711 - 97         Phage antirepressor protein locus|Sterm_1322, protein_id|YP_003308119.1, gi|269119942, InterPro:IPR003497, geneID|8596799
1353 1418465 1417974 492 - 484         hypothetical protein locus|Sterm_1324, protein_id|YP_003308121.1, gi|269119944, geneID|8596801
1354 1418855 1418565 291 - 99         hypothetical protein locus|Sterm_1325, protein_id|YP_003308122.1, gi|269119945, geneID|8596802
1355 1419169 1418873 297 - 17         hypothetical protein locus|Sterm_1326, protein_id|YP_003308123.1, gi|269119946, InterPro:IPR002048, geneID|8596803
1356 1419915 1419265 651 - 95         hypothetical protein locus|Sterm_1327, protein_id|YP_003308124.1, gi|269119947, geneID|8596804
1357 1420482 1419916 567 - 0         hypothetical protein locus|Sterm_1328, protein_id|YP_003308125.1, gi|269119948, geneID|8596805
1358 1420586 1420948 363 + 103     4: 6 1 7 9   Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake  
1359 1421255 1422157 903 + 306     2: 2 3   Oxidoreductase, aldo/keto reductase family locus|Sterm_1330, protein_id|YP_003308126.1, gi|269119949, InterPro:IPR001395, geneID|8599616
1360 1422356 1422832 477 + 198         Auxin-binding protein, putative locus|Sterm_1331, protein_id|YP_003308127.1, gi|269119950, InterPro:IPR006045, InterPro:IPR013096, geneID|8596807
1361 1423128 1422967 162 - 134         hypothetical protein locus|Sterm_1332, protein_id|YP_003308128.1, gi|269119951, geneID|8596808
1362 1423335 1423153 183 - 24         hypothetical protein locus|Sterm_1333, protein_id|YP_003308129.1, gi|269119952, geneID|8596809
1363 1423945 1423499 447 - 163     4: 4 10 5 8   Transcriptional regulator, MarR family locus|Sterm_1334, protein_id|YP_003308130.1, gi|269119953, InterPro:IPR000835, geneID|8596810
1364 1424239 1424829 591 + 293         hypothetical protein locus|Sterm_1335, protein_id|YP_003308131.1, gi|269119954, geneID|8596811
1365 1425469 1424993 477 - 163         Acetyltransferase, GNAT family locus|Sterm_1336, protein_id|YP_003308132.1, gi|269119955, InterPro:IPR000182, geneID|8596812
1366 1425749 1426234 486 + 279         hypothetical protein locus|Sterm_1337, protein_id|YP_003308133.1, gi|269119956, geneID|8596813

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
CBSS-272943.3.peg.1367 margovan Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase SvetaG Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
DprA vcrecy Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
YrdC-YciO-Sua5_and_associated_protein_families SvetaG Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake


  Protein Sequence

>fig|526218.6.peg.1358 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
MITAELGFQNNREIFAVPGFINYPSFKGCNKLIRELKAKLVLTGKDIADEFLWEKKSKAE
AEQSLSSEEKKILSLLDMEKSLDELIMETGLSAGIILAVLANLEVKDFIFEISGGRYKGR

MD5 = 93ae92b84efd792897ae9647eaedbbbb


  DNA Sequence

>fig|526218.6.peg.1358 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
ttgataaccgcagagctcggttttcagaataacagggagatttttgcagtacccggattt
ataaattatccttctttcaaaggctgtaataaactaataagagaattaaaggcaaagctg
gtgctgaccggaaaggatatagctgatgaatttttatgggaaaaaaaatcaaaagcagaa
gctgagcagagtctaagctctgaagagaaaaaaattctttccctgcttgatatggaaaag
agtctggatgaactgataatggaaacaggacttagtgcaggaattattttggcagtactt
gccaatcttgaagtaaaggattttatatttgaaatatccggaggaagatataaagggaga
tag


  DNA with Flanking Sequence

>fig|526218.6.peg.1358 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
tatgcttcattcctttgatatcaatcttatcttcaatatagtaagactttatttcttcaa
ttttagttcccttattaagcgggattccgtttcttaaataagctaagaatgaagtttcgt
tataatcaaatttgatggcagcatcttttgctgtaatcccttttttatagagatcaaata
atagtttgctttccttgtattctgcataattttcatgatcagcaaggaaatcttcatatg
tataattaagctcattaactacatcgactctgccggctattgaagtcagcttgggatgta
tcctgtaattgacaagttcatatacatattgtctggggaaaatcccctctaattccttct
ttgtatacttactaaataatttttccaataaaatcacttgtaaccctcctttgaatatgt
tataagtattatagcataaagttaaaaaaaagtggaatatatgtttgttttgcattagct
tatttcgtcaaggaggcgctttgataaccgcagagctcggttttcagaataacagggaga
tttttgcagtacccggatttataaattatccttctttcaaaggctgtaataaactaataa
gagaattaaaggcaaagctggtgctgaccggaaaggatatagctgatgaatttttatggg
aaaaaaaatcaaaagcagaagctgagcagagtctaagctctgaagagaaaaaaattcttt
ccctgcttgatatggaaaagagtctggatgaactgataatggaaacaggacttagtgcag
gaattattttggcagtacttgccaatcttgaagtaaaggattttatatttgaaatatccg
gaggaagatataaagggagatagataaaggaaaattttaataatgatattttatgttaac
tgcaattgtttttcagactttatacagaatttcagctgtctgttataattttcaaagaca
gctttttattatatgagagtacagtatttttgagaatagatacttaaaaacttttatttt
ttaagaatatggcgtaatatactcgaaaacaatgcaaaagatcagaatttttcgataatt
aagctggacgcaagtctaaattttttgttataataatttatagatttactaatgaatatg
aatactcaatctatggaaagaggtattttatgagaaaaatttttttggggaaatcaaatc
ttaaagtttcacagcttgggcttggatgcataaatttcggcagtaaaacatcagaatctg
attcttttgaacttctggatacctatattgaaaatggcggtaactttatagacactgcca
ataattatgcagtatgggcaggaggaaacggaaaacagagtga


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  Functional Coupling

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  Attributes

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  Protein Families

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