The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|526218.6.peg.1355: Sebaldella termitidis ATCC 33386

This feature in The SEED Viewer

NCBI Taxonomy Id: 526218

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NC_013517 from base 1412744 to 1423945 (11202 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1348 1412744 1414306 1563 +           TPR domain protein locus|Sterm_1318, protein_id|YP_003308115.1, gi|269119938, InterPro:IPR001440, InterPro:IPR006597, InterPro:IPR013026, InterPro:IPR013105, geneID|8596795
1349 1414401 1414565 165 + 94     1: 1   hypothetical protein locus|Sterm_1319, protein_id|YP_003308116.1, gi|269119939, geneID|8596796
1350 1414526 1414987 462 + -40     1: 1   hypothetical protein locus|Sterm_1320, protein_id|YP_003308117.1, gi|269119940, geneID|8596797
1351 1416681 1416136 546 - 1148         TPR domain protein locus|Sterm_1321, protein_id|YP_003308118.1, gi|269119941, InterPro:IPR001440, InterPro:IPR006597, InterPro:IPR011716, InterPro:IPR013026, geneID|8596798
1352 1417489 1416779 711 - 97         Phage antirepressor protein locus|Sterm_1322, protein_id|YP_003308119.1, gi|269119942, InterPro:IPR003497, geneID|8596799
1353 1418465 1417974 492 - 484     1: 1   hypothetical protein locus|Sterm_1324, protein_id|YP_003308121.1, gi|269119944, geneID|8596801
1354 1418855 1418565 291 - 99     1: 1   hypothetical protein locus|Sterm_1325, protein_id|YP_003308122.1, gi|269119945, geneID|8596802
1355 1419169 1418873 297 - 17     1: 1   hypothetical protein locus|Sterm_1326, protein_id|YP_003308123.1, gi|269119946, InterPro:IPR002048, geneID|8596803
1356 1419915 1419265 651 - 95     1: 1   hypothetical protein locus|Sterm_1327, protein_id|YP_003308124.1, gi|269119947, geneID|8596804
1357 1420482 1419916 567 - 0     1: 1   hypothetical protein locus|Sterm_1328, protein_id|YP_003308125.1, gi|269119948, geneID|8596805
1358 1420586 1420948 363 + 103     4: 5 9 10 2   Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake  
1359 1421255 1422157 903 + 306     2: 11 8   Oxidoreductase locus|Sterm_1330, protein_id|YP_003308126.1, gi|269119949, InterPro:IPR001395, geneID|8599616
1360 1422356 1422832 477 + 198         Auxin-binding protein, putative locus|Sterm_1331, protein_id|YP_003308127.1, gi|269119950, InterPro:IPR006045, InterPro:IPR013096, geneID|8596807
1361 1423128 1422967 162 - 134     1: 1   hypothetical protein locus|Sterm_1332, protein_id|YP_003308128.1, gi|269119951, geneID|8596808
1362 1423335 1423153 183 - 24     1: 1   hypothetical protein locus|Sterm_1333, protein_id|YP_003308129.1, gi|269119952, geneID|8596809
1363 1423945 1423499 447 - 163     4: 4 3 6 7   Transcriptional regulator, MarR family locus|Sterm_1334, protein_id|YP_003308130.1, gi|269119953, InterPro:IPR000835, geneID|8596810

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DHQS_phosphatase_fusion Thamm_Antje_user hypothetical protein


  Protein Sequence

>fig|526218.6.peg.1355 hypothetical protein
MTKEKMNELYEKSQEIVTMMEELGIKECNGYVLKSISSGTFLMLNNIYISLSLSYIYIND
NLNKFMPTTTLEIMIQFNDDINNDKFIQLEELYQNFLE

MD5 = ffe4a37aa8b265127b0eedd6a4211645


  DNA Sequence

>fig|526218.6.peg.1355 hypothetical protein
atgactaaagaaaaaatgaatgaactatatgaaaagtcacaggaaattgtgactatgatg
gaagaactaggaattaaggaatgtaatggatatgttttaaaaagtatctcttctggaact
tttcttatgctgaataatatttatatcagcttatctttatcatatatatatataaacgat
aatttaaataaatttatgcctactactactctggaaattatgatacaatttaacgatgac
attaataatgataaatttattcaacttgaagaactttatcagaattttttggaataa


  DNA with Flanking Sequence

>fig|526218.6.peg.1355 hypothetical protein
actttaaaatttaaaaaagattttgaagcttgctttaaactttgggataaatataatatt
tattacaatttattttatgaacttttttcttttttaaaagcaaatgatctaaatagcaat
accaaaaaaatatctaatttaataacacaattagatattaaaaacaccgaattaaatgat
caaattgatttttatgaaccatttattgataatagctttcattttgctattaaaaaatct
gttgaatacttaccgagctttttattaaaagcttatataggagaatattcaaaatatcat
tttattagatatacagatagccttaaaactgatataacacaaaacagaacttttataaaa
aattctctaaaggaaaaaattgatacattaaaggaaataaactaataaaaaaggagcacc
taataaaaggcactctaccgcaaatagattataccttttttaggtttctcctgtcaaata
aatttaatcaggaggaaaacatgactaaagaaaaaatgaatgaactatatgaaaagtcac
aggaaattgtgactatgatggaagaactaggaattaaggaatgtaatggatatgttttaa
aaagtatctcttctggaacttttcttatgctgaataatatttatatcagcttatctttat
catatatatatataaacgataatttaaataaatttatgcctactactactctggaaatta
tgatacaatttaacgatgacattaataatgataaatttattcaacttgaagaactttatc
agaattttttggaataatcaaatggagggaaaatatgaattggattcctatttcacaatt
aagtgatgatgctaaaatctggtctggaataattgtaaaattatacaatgttggcttgaa
tgtttcagataaatctaaagattattatgaatatctgatatcagagatttacggtaacaa
tgaatatttgcagcttacatgtctttcacaaggagaagccggaaacataatatgtgtttt
aaagaaagacctgcctaactattatgctttaggtaaagaattaaaaagaatgatgaagat
agaagatagaagatacttttattaatattgattctatataaaatacttatcttgcattta
tacaaaaaatgacttaaaatatacaagagtatatatacttgaaagttaggagtaatgaat
ccatatgaatgaatcagtagataaaattataagaaaaattactggagaattgcgtataat
tatagaaaaagaatctggtcgtgataaagaatattct


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|526218.4.peg.2560 Sebaldella termitidis ATCC 33386 FIG   hypothetical protein
gb|EEP36189.1 Sebaldella termitidis ATCC 33386     hypothetical protein StermDRAFT_15430
gi|229800150 Sebaldella termitidis ATCC 33386 NCBI   hypothetical protein StermDRAFT_15430
gi|229882591 Sebaldella termitidis ATCC 33386 NCBI   hypothetical protein StermDRAFT_15430
ref|ZP_04502065.1 Sebaldella termitidis ATCC 33386 RefSeq   hypothetical protein StermDRAFT_15430
tr|C4BZG4 Sebaldella termitidis ATCC 33386 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search