Protein Page for fig|526218.6.peg.1352

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

FIG search

Protein fig|526218.6.peg.1352: Sebaldella termitidis ATCC 33386

This feature in The SEED Viewer

NCBI Taxonomy Id: 526218

Current Assignment: Phage antirepressor protein

Translate Function Assignments

Context on contig NC_013517 from base 1411651 to 1422832 (11182 bp)


Fid	Start	End	Size (nt)		Gap	SS	Function	Aliases
1346	1411651	1412295	645	+			Helix-turn-helix motif	locus\|Sterm_1316, protein_id\|YP_003308113.1, gi\|269119936, InterPro:IPR001387, geneID\|8596793
1347	1412314	1412721	408	+	18	1: 1	hypothetical protein	locus\|Sterm_1317, protein_id\|YP_003308114.1, gi\|269119937, InterPro:IPR001440, InterPro:IPR013026, geneID\|8596794
1348	1412744	1414306	1563	+	22		TPR domain protein	locus\|Sterm_1318, protein_id\|YP_003308115.1, gi\|269119938, InterPro:IPR001440, InterPro:IPR006597, InterPro:IPR013026, InterPro:IPR013105, geneID\|8596795
1349	1414401	1414565	165	+	94	1: 1	hypothetical protein	locus\|Sterm_1319, protein_id\|YP_003308116.1, gi\|269119939, geneID\|8596796
1350	1414526	1414987	462	+	-40	1: 1	hypothetical protein	locus\|Sterm_1320, protein_id\|YP_003308117.1, gi\|269119940, geneID\|8596797
1351	1416681	1416136	546	-	1148		TPR domain protein	locus\|Sterm_1321, protein_id\|YP_003308118.1, gi\|269119941, InterPro:IPR001440, InterPro:IPR006597, InterPro:IPR011716, InterPro:IPR013026, geneID\|8596798
1352	1417489	1416779	711	-	97		Phage antirepressor protein	locus\|Sterm_1322, protein_id\|YP_003308119.1, gi\|269119942, InterPro:IPR003497, geneID\|8596799
1353	1418465	1417974	492	-	484	1: 1	hypothetical protein	locus\|Sterm_1324, protein_id\|YP_003308121.1, gi\|269119944, geneID\|8596801
1354	1418855	1418565	291	-	99	1: 1	hypothetical protein	locus\|Sterm_1325, protein_id\|YP_003308122.1, gi\|269119945, geneID\|8596802
1355	1419169	1418873	297	-	17	1: 1	hypothetical protein	locus\|Sterm_1326, protein_id\|YP_003308123.1, gi\|269119946, InterPro:IPR002048, geneID\|8596803
1356	1419915	1419265	651	-	95	1: 1	hypothetical protein	locus\|Sterm_1327, protein_id\|YP_003308124.1, gi\|269119947, geneID\|8596804
1357	1420482	1419916	567	-	0	1: 1	hypothetical protein	locus\|Sterm_1328, protein_id\|YP_003308125.1, gi\|269119948, geneID\|8596805
1358	1420586	1420948	363	+	103	4: 3 5 7 2	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
1359	1421255	1422157	903	+	306	2: 6 4	Oxidoreductase	locus\|Sterm_1330, protein_id\|YP_003308126.1, gi\|269119949, InterPro:IPR001395, geneID\|8599616
1360	1422356	1422832	477	+	198		Auxin-binding protein, putative	locus\|Sterm_1331, protein_id\|YP_003308127.1, gi\|269119950, InterPro:IPR006045, InterPro:IPR013096, geneID\|8596807

Annotation History / View All Related Annotations

Help on Annotations

Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|526218.6.peg.1352 Phage antirepressor protein
MDKLQIFQSKEFGKVRTVLIENEVWFVLIDICKILELSNPSSVIKRLDEDEVTKFDLGSL
SGITNIINESGLYKVIFRSDKPQANQFTKWVTHDVLPSLRKTGSYSINQTPKELELKEKE
IQLKTAEFLNNMADSILIPEYKQILNAHATKVLTGDFLLPLPVVGEITYSATEIGKMLNI
SANMVGRLTKKHNLRTEEYGKVFYDKSKYSSKEVETFRYYIKVIDILKNIVSTLSA

MD5 = 6b5a8584d7dc4adfbebae2d8bde4ed97

DNA Sequence

>fig|526218.6.peg.1352 Phage antirepressor protein
atggataaacttcaaatatttcaaagtaaagaatttggaaaagtaagaactgtattgata
gaaaatgaagtctggtttgtattaattgatatatgtaagatattagaactttcaaatcca
agtagtgtgatcaaaagattagatgaggacgaggtgactaagtttgacttagggagctta
tcagggattaccaatatcattaatgaaagcggattatataaagtaatttttagaagtgac
aaacctcaagctaatcaatttactaaatgggtaacccatgatgtattaccttcactaaga
aaaactggcagctactcaataaaccaaacaccaaaagaacttgaactaaaagaaaaagaa
atccaacttaaaactgctgaatttcttaataatatggctgacagtattctgattcctgaa
tacaagcagatacttaatgctcatgctactaaggtactaaccggggattttctacttcca
ttacctgttgttggtgaaataacctatagtgctactgaaattggcaaaatgcttaatatc
tcagctaatatggttggaagattaactaaaaagcataatctccgtactgaagaatatgga
aaagtcttttatgacaagtctaagtattccagtaaggaagttgagactttcaggtattat
attaaggttattgatattttaaagaatattgttagcactctatccgcataa

DNA with Flanking Sequence

>fig|526218.6.peg.1352 Phage antirepressor protein
atttactataacttgaggccatttcatggtctctttttttcaaaaaatacgtaaatacat
ttgacaaaaaagtaaatatgttatatattattattagaaataaaaatagccaactgttga
agcagctgactattataaaggatacttgttataagtacccccgaatatgtacattataac
aaatatcctaaaaaaatacaattttttaggaggaatcactatgaatcaaaacattaaaga
atttatgatctctcacattgaagagatgtatgattacggtcatttaaaagacgacctgtc
taaaatggaagataacttttataacttaattgaaaacatcaattctaaaactacatgtac
taaaaatgacatccaacagcttattaacacttttgaaactgtattattaaccgcaaagaa
aacctattttgaacacggagctacttctggaatatctaatatcaacaaaatgtatttaac
tccaaatgaggtggtacttcatggataaacttcaaatatttcaaagtaaagaatttggaa
aagtaagaactgtattgatagaaaatgaagtctggtttgtattaattgatatatgtaaga
tattagaactttcaaatccaagtagtgtgatcaaaagattagatgaggacgaggtgacta
agtttgacttagggagcttatcagggattaccaatatcattaatgaaagcggattatata
aagtaatttttagaagtgacaaacctcaagctaatcaatttactaaatgggtaacccatg
atgtattaccttcactaagaaaaactggcagctactcaataaaccaaacaccaaaagaac
ttgaactaaaagaaaaagaaatccaacttaaaactgctgaatttcttaataatatggctg
acagtattctgattcctgaatacaagcagatacttaatgctcatgctactaaggtactaa
ccggggattttctacttccattacctgttgttggtgaaataacctatagtgctactgaaa
ttggcaaaatgcttaatatctcagctaatatggttggaagattaactaaaaagcataatc
tccgtactgaagaatatggaaaagtcttttatgacaagtctaagtattccagtaaggaag
ttgagactttcaggtattatattaaggttattgatattttaaagaatattgttagcactc
tatccgcataaagaaaaatctctatataaaaatttttataaattatttgtttgatttttt
ataatttagctgttacaatttttcatatcttaactactggaggaactaatgattaaaaaa
atattcgttactttcattatctttggtgtattttattcttgctctccttcaaatcctgaa
ccaactgtaggaactgaagaatattatcttgaaaaaataaaaattgaagatcgagaatct
atgtttcaattaggtcttttatatcaagaacaaggaaaattcgaacttgctgaaaaatac
tatcttatggctagcgaacatagtgactctaatgctatgaacaatttaggaaatctatat
aaaaaacaagagaaatttgaacttgcagaaaggctctttctcatggccattaaatacgat
aataaattagccttatataatttaggacttttatatcatgatcaagaaaaattcaaactt
gctgaaaaatactatcttatggctattgaaa

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
fig\|526218.4.peg.2557	Sebaldella termitidis ATCC 33386	FIG	Phage antirepressor protein
gb\|EEP36185.1	Sebaldella termitidis ATCC 33386		prophage antirepressor
gi\|229800146	Sebaldella termitidis ATCC 33386	NCBI	prophage antirepressor
gi\|229882587	Sebaldella termitidis ATCC 33386	NCBI	prophage antirepressor
ref\|ZP_04502061.1	Sebaldella termitidis ATCC 33386	RefSeq	prophage antirepressor
tr\|C4BZG0	Sebaldella termitidis ATCC 33386	TrEMBL	Prophage antirepressor

Links to Related Entries in Other Sites

This PEG has no links.
add a new link

Functional Coupling


Score	Peg	Function

Attributes

Help on Attributes


Key Link Explains Key	Value

Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Help with SEED similarities options


Tool	Description
General Tools
Psi-Blast	NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred	Tool for Predicting Transmembrane regions
TMHMM	Prediction of transmembrane helices in proteins
*Protein Signals for Gram negative* bacteria**
Gram negative PSORT	Prediction of protein localization sites
Gram negative SignalP	Predicts the presence and location of signal peptide cleavage sites
*Protein Signals for Gram positive* bacteria**
Gram positive PSORT	Prediction of protein localization sites
Gram positive SignalP	Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP	Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar	Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch	Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO	Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO	Subcellular localization predictor at National Chiao Tung University
ProDom	A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB	An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold	The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions

FIG search