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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|525254.4.peg.1300: Anaerococcus lactolyticus ATCC 51172

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NCBI Taxonomy Id: 525254

Current Assignment: RNA polymerase sigma-70 factor, ECF subfamily
Translate Function Assignments



Context on contig NZ_GG666046 from base 409641 to 418761 (9121 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1297 409641 410150 510 +           Phage antirepressor protein  
1298 410143 411195 1053 + -8         hypothetical protein  
1299 411235 413049 1815 + 39         TrsK-like protein  
1300 413296 413823 528 + 246         RNA polymerase sigma-70 factor, ECF subfamily  
1301 413820 414608 789 + -4         hypothetical protein  
1302 414589 415476 888 + -20     3: 1 3 2   ABC transporter ATP-binding protein  
1303 415469 416662 1194 + -8         hypothetical protein  
1304 417086 417523 438 + 423         hypothetical protein  
1305 417703 418008 306 + 179         hypothetical protein  
1306 418415 418561 147 + 406         hypothetical protein  
1307 418621 418761 141 + 59         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|525254.4.peg.1300 RNA polymerase sigma-70 factor, ECF subfamily
MSTDFFLVCRIRNGDDKAAEIIIRKYYMKVFDYCKYHSENIHAAEDLTQEVFLIFLKKID
QYKHRGKLLNYLYTIARNKCIDERKKESNKDISIECIDYEVSSSFNESERTIESLYVREA
VEKLPSDIREIIIMYYFLDMKQREIADICNISLELVKYRLKKGKEMIKKYIGGEI

MD5 = ccd920d5324ae94cdea677563dada32a


  DNA Sequence

>fig|525254.4.peg.1300 RNA polymerase sigma-70 factor, ECF subfamily
atgagcacagatttttttcttgtctgtcgcattagaaatggtgatgataaggctgcagaa
attataattcgaaaatattatatgaaagtctttgactactgcaagtatcattccgagaat
atacatgcagccgaagatttaacacaagaggtatttttgatttttttaaagaaaattgat
caatataaacataggggtaaacttttaaactatttatatacgattgctcgcaataagtgt
attgatgagagaaaaaaagaaagtaataaagatatttcaattgaatgtattgactatgag
gtatcatcaagttttaatgaatccgaaagaacaatagaatctttatatgttagggaagcg
gttgaaaagctaccatcagatattagagagattataatcatgtattattttcttgatatg
aaacagcgagaaattgctgatatatgcaacatttcattagaacttgtaaaatacagattg
aagaaaggtaaagaaatgataaaaaagtatataggaggtgaaatatga


  DNA with Flanking Sequence

>fig|525254.4.peg.1300 RNA polymerase sigma-70 factor, ECF subfamily
aaaagatagaaatatattttaacttcataggaaattatgaagtgccaaaagaagagttaa
gcgaagaagaacgtttaaaacttgaggaagaagaacgaaaaattaatgagagaagagaca
gacttcatcaaaattatctaaagcgtaaagcaaatgggaaacaacaggaatatgaggaaa
ggtataaggcaaggagagaacagaaaaaactaaaaaacttaaaaaacaggaataccaata
agatagtaaactaattttaccaatattaattgatattctaaaaaaatattaaccattttt
tgcaagatgattttagtattgctgaaatgatgagactgttaaataatatgagatatattt
attgttaataaaaccttgaagaacagtacgaatacaagagataagaaaatattttttaag
atataaaaaactatcttttttagtattataatcgttatatattatgtaaggctattttag
tcataggagaattgatagatatgagcacagatttttttcttgtctgtcgcattagaaatg
gtgatgataaggctgcagaaattataattcgaaaatattatatgaaagtctttgactact
gcaagtatcattccgagaatatacatgcagccgaagatttaacacaagaggtatttttga
tttttttaaagaaaattgatcaatataaacataggggtaaacttttaaactatttatata
cgattgctcgcaataagtgtattgatgagagaaaaaaagaaagtaataaagatatttcaa
ttgaatgtattgactatgaggtatcatcaagttttaatgaatccgaaagaacaatagaat
ctttatatgttagggaagcggttgaaaagctaccatcagatattagagagattataatca
tgtattattttcttgatatgaaacagcgagaaattgctgatatatgcaacatttcattag
aacttgtaaaatacagattgaagaaaggtaaagaaatgataaaaaagtatataggaggtg
aaatatgaaacagatgaatttttctgaagatagactagaaaaaattctaaaaaatatgaa
taaacaaaatgagcagaaaccgtctaaggaagcaatagatagtttagttctcaaagctag
agaattgatcaatagcatagataatgaaagtagaattggatttattgaatttattatttt
acaagtcaaaatcatgaaaaaagagtgttggcttgcacaagcatttttgctttttattgc
agcaaaatggttatctatttcgaatggtgaagcttatgtacaaagaggattaagcataat
agcctcattgtttgttatactcgtaattcctgagttatggaggaatattgagaataaatc
aatagagattgaggaaacttcaattttcaatttacgaaagatatatgcagctaaacttat
agcttttggttttattgatactactattttgacactgttttgtatttatgctgtgcagat
gcaagaaatcatgtttgcagatatttta


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003700       F:transcription factor activity
GO:0003899       F:DNA-directed RNA polymerase activity
GO:0006352       P:transcription initiation
GO:0006355       P:regulation of transcription, DNA-dependent
GO:0016987       F:sigma factor activity
gb|EEI85542.1 Anaerococcus lactolyticus ATCC 51172     ECF family DNA-directed RNA polymerase sigma subunit SigW
gi|227235527 Anaerococcus lactolyticus ATCC 51172 NCBI   ECF family DNA-directed RNA polymerase sigma subunit SigW
gi|227486479 Anaerococcus lactolyticus ATCC 51172 NCBI   ECF family DNA-directed RNA polymerase sigma subunit SigW
ref|ZP_03916795.1 Anaerococcus lactolyticus ATCC 51172 RefSeq   ECF family DNA-directed RNA polymerase sigma subunit SigW
tr|C2BHR2 Anaerococcus lactolyticus ATCC 51172 TrEMBL   ECF family DNA-directed RNA polymerase sigma subunit SigW


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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