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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|525254.4.peg.1297: Anaerococcus lactolyticus ATCC 51172

This feature in The SEED Viewer

NCBI Taxonomy Id: 525254

Current Assignment: Phage antirepressor protein
Translate Function Assignments



Context on contig NZ_GG666046 from base 404519 to 415476 (10958 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1295 404519 404992 474 +       1: 4   Transcription elongation factor GreA  
1296 405002 406915 1914 + 9     2: 6 1   Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)  
1297 409641 410150 510 + 2725         Phage antirepressor protein  
1298 410143 411195 1053 + -8         hypothetical protein  
1299 411235 413049 1815 + 39         TrsK-like protein  
1300 413296 413823 528 + 246         RNA polymerase sigma-70 factor, ECF subfamily  
1301 413820 414608 789 + -4         hypothetical protein  
1302 414589 415476 888 + -20     3: 5 3 2   ABC transporter ATP-binding protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|525254.4.peg.1297 Phage antirepressor protein
MYSLILSSKLPQAKIFKAWVTREVLPSIRKNGGYIAGQEKKTNEELLADAILVANRIIAK
REEEIEVLRPKADYYDKLVDYNLLTNFRNTAKELGIPQNQFISFLMDKGLIYRDKKKKLL
PYADKNKGYFEVKEWVDPLGTLVGIQTFITPKGRHYLLILLDSEGFYDE

MD5 = faaf5f46ff1221a460346a72115fb198


  DNA Sequence

>fig|525254.4.peg.1297 Phage antirepressor protein
ttgtattcacttatcctctcatcaaaactaccacaagcaaaaatattcaaagcttgggta
actagagaagttttaccgagcattagaaaaaatggaggatatatagctggtcaagaaaag
aaaactaacgaagagctacttgcagatgcaattctagtagccaatagaattattgccaaa
agagaagaagaaattgaagtattaagaccaaaggcagactattatgacaaattagtagat
tataatctacttacaaactttagaaacactgctaaagagttaggaataccacaaaatcaa
tttataagttttctaatggataagggattaatttatagagataagaaaaagaaacttcta
ccttatgcagataagaacaagggatattttgaagtaaaagaatgggttgaccctctaggt
acacttgtaggcatacaaacatttataacaccaaagggaagacactacctactaatttta
ttagatagtgaaggtttctacgatgaataa


  DNA with Flanking Sequence

>fig|525254.4.peg.1297 Phage antirepressor protein
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnttatgttaatccaagaaaagctatttatgaccatg
tagatgaagaagataagggtgtaacgaaatggaacacccctggaggaatacagaatattt
caataattaatgagtcaggattgtattcacttatcctctcatcaaaactaccacaagcaa
aaatattcaaagcttgggtaactagagaagttttaccgagcattagaaaaaatggaggat
atatagctggtcaagaaaagaaaactaacgaagagctacttgcagatgcaattctagtag
ccaatagaattattgccaaaagagaagaagaaattgaagtattaagaccaaaggcagact
attatgacaaattagtagattataatctacttacaaactttagaaacactgctaaagagt
taggaataccacaaaatcaatttataagttttctaatggataagggattaatttatagag
ataagaaaaagaaacttctaccttatgcagataagaacaagggatattttgaagtaaaag
aatgggttgaccctctaggtacacttgtaggcatacaaacatttataacaccaaagggaa
gacactacctactaattttattagatagtgaaggtttctacgatgaataaggtattagaa
gccattctttctgatattaaaaacctaattaaaatagacaacccaaagaaatttatatta
gcaaacattccttatctatcatttttttacattggaaatatcttttctaagcacattaat
tcttatgttggaggagatattattgatagattaatggtgggaatttctgatataggaact
ttatcctatataccaagtattaatccaagggacttgttagtaggtatttcagttgctggt
cttgttaagctaattgtttatagcaaagggaaaaataaaaagaaatataggcaaggcaag
gagtatggatctgcaagatggggagaaagtaaggatattgctccatacattgaccctaag
tttgaaaacaatgttctcataactaatactgaaagacttacaatgaactcaagacctaaa
aatcctaaatacgctaggaataaaaatgtattagtaataggtggttctggatcaggtaaa
acgagatttt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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Tool Description
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ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
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