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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|525254.4.peg.1295: Anaerococcus lactolyticus ATCC 51172

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NCBI Taxonomy Id: 525254

Current Assignment: Transcription elongation factor GreA
Translate Function Assignments



Context on contig NZ_GG666046 from base 399507 to 410150 (10644 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1288 399507 399752 246 +       1: 1   S4-domain-containing heat shock protein  
1289 399745 400278 534 + -8         hypothetical protein  
1290 400262 401626 1365 + -17     5: 22 12 7 14 1   tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)  
1291 401616 402185 570 + -11     3: 8 5 1   Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)  
1292 402229 402720 492 + 43         hypothetical protein  
1293 402783 403574 792 + 62 9 11: 3 20 19 11 4 2 16 21 13 17 15   Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)  
1294 403552 404550 999 + -23 8 1: 6   tRNA dihydrouridine synthase B (EC 1.-.-.-)  
1295 404519 404992 474 + -32   1: 9   Transcription elongation factor GreA  
1296 405002 406915 1914 + 9 12 2: 10 18   Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)  
1297 409641 410150 510 + 2725         Phage antirepressor protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Transcription_factors_bacterial gjo Transcription elongation factor GreA


  Protein Sequence

>fig|525254.4.peg.1295 Transcription elongation factor GreA
MTEKKEVILTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGE
VESRIMKIEDMIRNAKTIEVDENSDTVGVGNTVCLYDEEFEEDVEYKIVGTAESNPLEGY
ISNESPVGEAIIGHKINDRVEVETPNGKMYFVIKNIK

MD5 = 4402fbdfb86479a1a9eb8e074da1003e


  DNA Sequence

>fig|525254.4.peg.1295 Transcription elongation factor GreA
atgacagagaagaaagaagtaatattaactaaggaaaaattagaaaaattagaggacgaa
ttagagtatttaaaaacgaaaaaacgtcctgaaatggcagaaaaaatcaaaatagcaaga
agcttcggtgacctttcagaaaatgctgattacgatgaagcaaagaatgaacaaggtgaa
gtagaatcaagaatcatgaagatagaagacatgattagaaatgccaagactatcgaagtt
gatgaaaattctgacactgttggtgttggcaatactgtttgtctttacgatgaagaattt
gaagaagatgtagaatataaaatcgtaggaacagctgaatcaaacccacttgaagggtat
atttctaatgagtcaccagttggtgaagctatcattggtcataagattaatgatagggta
gaagtagaaactccaaatggcaagatgtattttgtaattaagaatattaagtaa


  DNA with Flanking Sequence

>fig|525254.4.peg.1295 Transcription elongation factor GreA
ggcaatggaagaagctggtgcagactacctaatccttcatgctaggactagaaaagccat
gtattctggtcatgccgactggcaggcgattaaaaatttaaaagaagctgtaaatatacc
agtaatagcaaatggcgatatttttactccagaagattttataagagcaatggagataac
cggagctgatggagcgatgattgcaaggggtgccatgggaaatcccttcatatttcgtta
tataaaggaatatttagaaaaaggctcctacacaaaagttacatttgatgagataatttc
tcaaataaaagagcattatgaattggcccttaagtttaaggacgaaaggctagtgataaa
tcaaatgcgcaaacatgttggttggtacatcaagggtctttatatgtcaagtgactatag
ggacagggtaaataagatacatactagcaaggaaatttttgacctgctagatgaatatag
aaaaattttaggtgattataatgacagagaagaaagaagtaatattaactaaggaaaaat
tagaaaaattagaggacgaattagagtatttaaaaacgaaaaaacgtcctgaaatggcag
aaaaaatcaaaatagcaagaagcttcggtgacctttcagaaaatgctgattacgatgaag
caaagaatgaacaaggtgaagtagaatcaagaatcatgaagatagaagacatgattagaa
atgccaagactatcgaagttgatgaaaattctgacactgttggtgttggcaatactgttt
gtctttacgatgaagaatttgaagaagatgtagaatataaaatcgtaggaacagctgaat
caaacccacttgaagggtatatttctaatgagtcaccagttggtgaagctatcattggtc
ataagattaatgatagggtagaagtagaaactccaaatggcaagatgtattttgtaatta
agaatattaagtaaggagaaaaaatggctgataacattcaagatttaaatgaaatgctta
agattagaagagaaaaacttcatgaacttaaggaagagggcaaggacccacaccgcatag
ttaattttaaaaataggataagctcaaaagaaatcaaggataactttgagaagtatgaag
atcaaactgtaagggtagctggaagaatccttgcaaaaagaggtcatggtaacatgagct
ttatggatgttcaagatgaccttggtcaaatccaagttgttaaccgtaaaaatgttatcg
gcgatgactttaaatatatcaaaaaatacgatatcggtgatatcatcggtgttgaaggca
aggtatttaaaactaaccaaggtgaaatatcaatagaagtagcaaaaagcgaccttttaa
ccaaggctctccaaatgcttcctgaaaaatggcacggcctaaaggacccagaccttagat
atagacaaagatatatagacttaatagtaaatcc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
GO:0003711       F:transcription elongation regulator activity
GO:0003746       F:translation elongation factor activity
GO:0006355       P:regulation of transcription, DNA-dependent
gb|EEI85668.1 Anaerococcus lactolyticus ATCC 51172     transcription elongation factor
gi|227235653 Anaerococcus lactolyticus ATCC 51172 NCBI   transcription elongation factor
gi|227486472 Anaerococcus lactolyticus ATCC 51172 NCBI   transcription elongation factor
ref|ZP_03916788.1 Anaerococcus lactolyticus ATCC 51172 RefSeq   transcription elongation factor
tr|C2BHQ5 Anaerococcus lactolyticus ATCC 51172 TrEMBL   Transcription elongation factor


  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
9 fig|525254.4.peg.1293 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)
8 fig|525254.4.peg.1294 tRNA dihydrouridine synthase B (EC 1.-.-.-)
12 fig|525254.4.peg.1296 Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)


  Attributes

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  Protein Families

No protein families found

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