The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|469605.3.peg.259: Fusobacterium sp. 3_1_5R

This feature in The SEED Viewer

NCBI Taxonomy Id: 469605

Current Assignment: FIG00669821: hypothetical protein
Translate Function Assignments



Context on contig NZ_GG657971 from base 82597 to 95978 (13382 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
252 82597 82761 165 +           hypothetical protein  
253 82885 83397 513 + 123         hypothetical protein  
254 83397 84992 1596 + -1         hypothetical protein  
255 85196 85543 348 + 203         hypothetical protein  
256 85606 86010 405 + 62         hypothetical protein  
257 86024 86206 183 + 13         hypothetical protein  
258 86401 87351 951 + 194         FIG00670543: hypothetical protein  
259 87465 87815 351 + 113         FIG00669821: hypothetical protein  
260 87835 88809 975 + 19         FIG00669796: hypothetical protein  
261 88814 89152 339 + 4         FIG00671864: hypothetical protein  
262 89149 89589 441 + -4         FIG00670688: hypothetical protein  
263 89604 90560 957 + 14         FIG00671820: hypothetical protein  
264 90577 90966 390 + 16         FIG00671569: hypothetical protein  
265 91050 91232 183 + 83         hypothetical protein  
266 91278 95978 4701 + 45         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|469605.3.peg.259 FIG00669821: hypothetical protein
MARYDRKEKELVQIVEDTLTIAGVVKQDEDVNLYSLVAYNHSEDKWVKFVKETHKTGFAV
AMVKQAKGIEFDNTGKDVVVPLLKIGIVNKEVVKKAFSELDQETVGICLAQGLAIL

MD5 = 15bf66d2fdc8e2d9425a258ea9112867


  DNA Sequence

>fig|469605.3.peg.259 FIG00669821: hypothetical protein
atggctagatatgacagaaaagaaaaagagttagtacaaattgtagaagacactcttact
atagctggagtagtgaaacaagatgaagatgtcaacctttattctttagttgcatataat
cattcagaagacaaatgggttaaatttgtaaaagaaacacataaaactggatttgcagta
gcaatggtaaaacaagcaaaaggaatcgaatttgacaatactggaaaagatgttgtggtt
ccattattaaaaattggaattgtaaataaagaagtagtaaaaaaggcattttcagaatta
gatcaagaaacagtaggaatttgtttggcacaaggattagcaattctttaa


  DNA with Flanking Sequence

>fig|469605.3.peg.259 FIG00669821: hypothetical protein
aaagtggaagcaattcaagtagaaccgaaagttccgaaaacagaagatgaaattcgagca
gaaatcacagctcaaatggaatttgaagcaaaaagaaatcaattgattgaaaaggcaaaa
gcaaaattcactccagcacaacaagaaatcatggaatttgcattaaaaaaagcaggagaa
gaaagaacaactgttttagaatttgaatctaacggaaagaaagaaaatatgtcttatttt
gaaagatttgaaaaagcggtagaaacaatggaagacgctgctaattttacaagcaagaca
aaagaattagaatttgaaaacaaagaagaaaaaacagatgcaatgaagcaagcttatgat
agaacaaaagctagattttcaaaatgataggaggagtaaatgaccaaaataggaattttc
atgtttgtgttagcagtaattggaattgcagcacatttttggaataaaaaacataatgac
agaaaaggaggaaaaaaataatggctagatatgacagaaaagaaaaagagttagtacaaa
ttgtagaagacactcttactatagctggagtagtgaaacaagatgaagatgtcaaccttt
attctttagttgcatataatcattcagaagacaaatgggttaaatttgtaaaagaaacac
ataaaactggatttgcagtagcaatggtaaaacaagcaaaaggaatcgaatttgacaata
ctggaaaagatgttgtggttccattattaaaaattggaattgtaaataaagaagtagtaa
aaaaggcattttcagaattagatcaagaaacagtaggaatttgtttggcacaaggattag
caattctttaatgagaaaaggaggaaatgaatgttaacagaaaaacaaaaagaatacatt
ggagtatatgcagcaattccaagtcctaatatgttttactgggatttatttagagaagca
agagaagcatatttggggttgggagaaacaatcaatttagatgaagttatggcagaaatg
aaagaagcaggaattgttccaagagatacagaattaccacctatgacagtaaatggaaat
gtagcagtttctatcactcctgacatcgttggaaactctgttggtatctctgcgttagat
tctatcaatgcgaatagaacagatactgtagtggtaaatgggcaacaaatgacagcttct
caatatgacgttgagaacaaaactatgactttgaagaactctatttgcaatacaacaaat
agaatggctgcacaagcattactaactggaaaagtgaaatgtgcaggtggacaagaagtt
gacatgaagctaccaaaagatgttgaagtag


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
gi|257451510 Fusobacterium sp. 3_1_5R NCBI   hypothetical protein F3_00502
ref|ZP_05616809.1 Fusobacterium sp. 3_1_5R RefSeq   hypothetical protein F3_00502


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search