The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
248 | 80472 | 80747 | 276 | + | ![]() |
hypothetical protein | ||||||
249 | 80760 | 81521 | 762 | + | 12 | ![]() |
Phage antirepressor protein | |||||
250 | 81561 | 81749 | 189 | + | 39 | ![]() |
hypothetical protein | |||||
251 | 82224 | 82433 | 210 | + | 474 | ![]() |
hypothetical protein | |||||
252 | 82597 | 82761 | 165 | + | 163 | ![]() |
hypothetical protein | |||||
253 | 82885 | 83397 | 513 | + | 123 | ![]() |
hypothetical protein | |||||
254 | 83397 | 84992 | 1596 | + | -1 | ![]() |
hypothetical protein | |||||
255 | 85196 | 85543 | 348 | + | 203 | ![]() |
hypothetical protein | |||||
256 | 85606 | 86010 | 405 | + | 62 | ![]() |
hypothetical protein | |||||
257 | 86024 | 86206 | 183 | + | 13 | ![]() |
hypothetical protein | |||||
258 | 86401 | 87351 | 951 | + | 194 | ![]() |
FIG00670543: hypothetical protein | |||||
259 | 87465 | 87815 | 351 | + | 113 | ![]() |
FIG00669821: hypothetical protein | |||||
260 | 87835 | 88809 | 975 | + | 19 | ![]() |
FIG00669796: hypothetical protein | |||||
261 | 88814 | 89152 | 339 | + | 4 | ![]() |
FIG00671864: hypothetical protein | |||||
262 | 89149 | 89589 | 441 | + | -4 | ![]() |
FIG00670688: hypothetical protein | |||||
263 | 89604 | 90560 | 957 | + | 14 | ![]() |
FIG00671820: hypothetical protein | |||||
264 | 90577 | 90966 | 390 | + | 16 | ![]() |
FIG00671569: hypothetical protein |
Annotation History / View All Related Annotations | Help on Annotations |
Score | Peg | Function |
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Key Link Explains Key |
Value |
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Compare Regions |
Tool | Description |
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General Tools | |
Psi-Blast | NCBI's psi-blast is used to locate distant similarities |
Transmembrane Predictions | |
TMpred | Tool for Predicting Transmembrane regions |
TMHMM | Prediction of transmembrane helices in proteins |
Protein Signals for Gram negative bacteria | |
Gram negative PSORT | Prediction of protein localization sites |
Gram negative SignalP | Predicts the presence and location of signal peptide cleavage sites |
Protein Signals for Gram positive bacteria | |
Gram positive PSORT | Prediction of protein localization sites |
Gram positive SignalP | Predicts the presence and location of signal peptide cleavage sites |
Other useful tools | |
LipoP | Prediction of lipoproteins and signal peptides in Gram negative bacteria |
Radar | Rapid Automatic Detection and Alignment of Repeats in protein sequences |
PPSearch | Search for protein motifs against all patterns stored in the PROSITE pattern database |
Gram negative CELLO | Subcellular localization predictor at National Chiao Tung University |
Gram positive CELLO | Subcellular localization predictor at National Chiao Tung University |
ProDom | A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
PDB | An Information Portal to Biological Macromolecular Structures |
For Specific Organisms | |
RNAFold | The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. |