The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|469605.3.peg.254: Fusobacterium sp. 3_1_5R

This feature in The SEED Viewer

NCBI Taxonomy Id: 469605

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG657971 from base 78066 to 90560 (12495 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
242 78066 78527 462 +           hypothetical protein  
243 78640 78810 171 + 112         hypothetical protein  
244 78928 79050 123 + 117         hypothetical protein  
245 79047 79613 567 + -4         putative antirepressor  
246 79758 79946 189 + 144         hypothetical protein  
247 80186 80359 174 + 239         hypothetical protein  
248 80472 80747 276 + 112         hypothetical protein  
249 80760 81521 762 + 12         Phage antirepressor protein  
250 81561 81749 189 + 39         hypothetical protein  
251 82224 82433 210 + 474         hypothetical protein  
252 82597 82761 165 + 163         hypothetical protein  
253 82885 83397 513 + 123         hypothetical protein  
254 83397 84992 1596 + -1         hypothetical protein  
255 85196 85543 348 + 203         hypothetical protein  
256 85606 86010 405 + 62         hypothetical protein  
257 86024 86206 183 + 13         hypothetical protein  
258 86401 87351 951 + 194         FIG00670543: hypothetical protein  
259 87465 87815 351 + 113         FIG00669821: hypothetical protein  
260 87835 88809 975 + 19         FIG00669796: hypothetical protein  
261 88814 89152 339 + 4         FIG00671864: hypothetical protein  
262 89149 89589 441 + -4         FIG00670688: hypothetical protein  
263 89604 90560 957 + 14         FIG00671820: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|469605.3.peg.254 hypothetical protein
MMNKEEFLTEKKKMLEETKKNAWAFMHASKELLADKEFMIEAAKKNGGALEYASSELKSD
KEFVIVAVCQQGRILRYAAEELKDDEDVILAAISNDGSALEFATERLRKKREVVLVAVKT
TGYGLEFASDNLRNDKEVVLTAVKRDEWALKFASDELRNDKCFILEIMKCCNNWALEYAS
DELRNDKEVVIEAMKGRHSIPLWLASERLQHDKDVVLENIANDILRKMQYDISKIKCEKI
NGEIKVSLPKQDLGIDEEQKREIIKKNIESILLKTYDDEDILKVVKELEKYENLEDILKK
IKGDFTNPFREEMIKKIEEKPSLLEYADYEIRNDKEVILSMIKKAWYVFRFASKELRANK
KVVLAAIEENALNLQYASEELKNDKEIVIKAVKQIGAAIGYASERLKNDREIGMEAIKND
HLALWLAGEKLKNDKFFVIEAMKYNPDTLFGASKELQEDKDVMLECITSKLLKIIEEKLK
DNIEHKEKRKFIKENIESILLKTFDDEEILKAVNILEEHKNLQEILNIIKK

MD5 = 9d2bf8dcb94fc3993e0cc867c7adbca5


  DNA Sequence

>fig|469605.3.peg.254 hypothetical protein
atgatgaataaagaagaatttttgacagaaaagaaaaaaatgttagaagaaacgaaaaaa
aatgcttgggcatttatgcacgcttcaaaagaattattagctgacaaagaatttatgatt
gaagcagcaaaaaaaaatggtggagcattagagtatgcttcttctgaattaaaaagtgac
aaagaatttgtaattgtcgctgtatgtcaacaaggaagaattttaagatatgcagcagaa
gagttaaaagatgatgaagacgtcatcttagcagcaatctcaaacgatggttcagcacta
gagtttgcaactgaaagattaagaaagaaaagagaagttgttttagtagctgtgaaaaca
acaggttacggattagaatttgcttctgataatcttagaaacgacaaagaagtcgtttta
actgctgtaaaacgagatgaatgggcattaaaattcgcatctgacgagttaagaaatgat
aaatgcttcatattagaaattatgaaatgttgcaataactgggcattagaatatgcttct
gatgaattgagaaatgataaagaagttgttatagaagctatgaaaggtagacattccatt
cctctttggcttgcatcggaaagattgcaacacgataaagatgtagtcttagaaaacatc
gcaaacgacatactgcgtaaaatgcaatatgatataagtaaaataaagtgcgaaaagata
aacggcgaaataaaagtttcactaccaaagcaagatttaggaatagatgaagaacaaaaa
agagaaatcatcaagaaaaatatcgaaagtattttattaaaaacatatgacgatgaagat
attttaaaagttgtaaaagaattagaaaaatatgaaaatcttgaagacattttaaaaaaa
ataaaaggggattttactaatcctttcagagaagaaatgataaaaaaaatagaagaaaaa
cctagtttgctagaatatgctgattatgaaattagaaatgacaaagaagtcattttgtca
atgataaaaaaagcatggtatgtttttagatttgcttctaaagaattaagagctaataaa
aaagttgtactggcagctatagaagaaaacgcacttaatttacagtatgcttctgaggaa
ttgaaaaatgacaaagaaattgtcatcaaagctgtaaaacagattggagctgctatagga
tatgcaagcgaaaggttgaaaaatgacagagagattggaatggaagctataaaaaatgac
catctagccctttggcttgcaggagaaaaattgaaaaacgataaattttttgtaatagaa
gcaatgaaatacaacccagatacgctatttggtgcttctaaagaattacaagaagataaa
gacgtaatgctagaatgtattactagcaaactcttaaaaataatagaagaaaaattaaag
gacaatatagaacacaaagaaaaaagaaagtttataaaagaaaacattgagagtatcttg
ttaaagacttttgatgacgaagaaattttaaaagctgtgaatattttagaagaacataaa
aatcttcaagaaatattaaacataataaaaaaataa


  DNA with Flanking Sequence

>fig|469605.3.peg.254 hypothetical protein
gatatgaaaaacggtttattagtgaatgcggtgattgactttataaatttcttaagagat
gaaaacgaatttaattataaattcgtatctgaaaatcaagagattttctatactgatggt
tgtaaagcaattatgaatttacaattaaataaagaaaaatataaaaataacaaaagtcaa
aatttccttttctcgttttctagaattttaaaagatatgaatgaagatgatgaattaaaa
aaagaactatcagaattcatacttgaatatttaaaagaaaccaacaactataatgaagaa
atgaaaggatatattgtaaattcatatgtaactttagatgtattaactgaaacagttgac
gttgataaagaaagagcgactttattaaaagaattttctgatgaaattagaaaaatagaa
ccaagttttagacttgcattagattgggattcttattttaaagaatgtcaaaaaatggaa
gaaacaggagtgtgggaataatgatgaataaagaagaatttttgacagaaaagaaaaaaa
tgttagaagaaacgaaaaaaaatgcttgggcatttatgcacgcttcaaaagaattattag
ctgacaaagaatttatgattgaagcagcaaaaaaaaatggtggagcattagagtatgctt
cttctgaattaaaaagtgacaaagaatttgtaattgtcgctgtatgtcaacaaggaagaa
ttttaagatatgcagcagaagagttaaaagatgatgaagacgtcatcttagcagcaatct
caaacgatggttcagcactagagtttgcaactgaaagattaagaaagaaaagagaagttg
ttttagtagctgtgaaaacaacaggttacggattagaatttgcttctgataatcttagaa
acgacaaagaagtcgttttaactgctgtaaaacgagatgaatgggcattaaaattcgcat
ctgacgagttaagaaatgataaatgcttcatattagaaattatgaaatgttgcaataact
gggcattagaatatgcttctgatgaattgagaaatgataaagaagttgttatagaagcta
tgaaaggtagacattccattcctctttggcttgcatcggaaagattgcaacacgataaag
atgtagtcttagaaaacatcgcaaacgacatactgcgtaaaatgcaatatgatataagta
aaataaagtgcgaaaagataaacggcgaaataaaagtttcactaccaaagcaagatttag
gaatagatgaagaacaaaaaagagaaatcatcaagaaaaatatcgaaagtattttattaa
aaacatatgacgatgaagatattttaaaagttgtaaaagaattagaaaaatatgaaaatc
ttgaagacattttaaaaaaaataaaaggggattttactaatcctttcagagaagaaatga
taaaaaaaatagaagaaaaacctagtttgctagaatatgctgattatgaaattagaaatg
acaaagaagtcattttgtcaatgataaaaaaagcatggtatgtttttagatttgcttcta
aagaattaagagctaataaaaaagttgtactggcagctatagaagaaaacgcacttaatt
tacagtatgcttctgaggaattgaaaaatgacaaagaaattgtcatcaaagctgtaaaac
agattggagctgctataggatatgcaagcgaaaggttgaaaaatgacagagagattggaa
tggaagctataaaaaatgaccatctagccctttggcttgcaggagaaaaattgaaaaacg
ataaattttttgtaatagaagcaatgaaatacaacccagatacgctatttggtgcttcta
aagaattacaagaagataaagacgtaatgctagaatgtattactagcaaactcttaaaaa
taatagaagaaaaattaaaggacaatatagaacacaaagaaaaaagaaagtttataaaag
aaaacattgagagtatcttgttaaagacttttgatgacgaagaaattttaaaagctgtga
atattttagaagaacataaaaatcttcaagaaatattaaacataataaaaaaataataaa
aaaaagagggctctcaccagccctctaacggtaaagcttaaaagcttttattaaaatctc
actatacgtgagtttagttgttttaattatacaactaattttataaaaaatcaagaaaat
taggagaatatgaataatacaataaaatatttcaaaaaaggaagaattgttagttgctat
gaaagaggagagagataatatgtcagtatttacaagagaagataaactatttgtagaata
tttaaaagattattttgcagaagaaatgaagaatgggttgatcagtaaaatagctacatt
tgatgatagagagtatacattctttttttcagaactatccacactaaaaattatagtgat
ggaaacagaagacgataatggactatctcttcatatgggtacaaatgaggatagctctga
atatcttacaaaattcgcagaatttatgaacactgataaatttaaaaaattatataaaaa
tttagaaaattattgg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
gi|257451504 Fusobacterium sp. 3_1_5R NCBI   hypothetical protein F3_00472
ref|ZP_05616803.1 Fusobacterium sp. 3_1_5R RefSeq   hypothetical protein F3_00472


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search