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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|469605.3.peg.239: Fusobacterium sp. 3_1_5R

This feature in The SEED Viewer

NCBI Taxonomy Id: 469605

Current Assignment: DNA repair protein radC
Translate Function Assignments


Context on contig NZ_GG657971 from base 71453 to 81749 (10297 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
234 71453 72157 705 +           terminase, large subunit  
235 72205 72834 630 + 47         Phage terminase, large subunit  
236 72846 75368 2523 + 11         hypothetical protein  
237 75372 75596 225 + 3         hypothetical protein  
238 75629 76210 582 + 32         hypothetical protein  
239 76530 77054 525 + 319         DNA repair protein radC  
240 77423 77145 279 - 90     1: 1   DNA-binding protein HU  
241 77583 78050 468 + 159         hypothetical protein  
242 78066 78527 462 + 15         hypothetical protein  
243 78640 78810 171 + 112         hypothetical protein  
244 78928 79050 123 + 117         hypothetical protein  
245 79047 79613 567 + -4         putative antirepressor  
246 79758 79946 189 + 144         hypothetical protein  
247 80186 80359 174 + 239         hypothetical protein  
248 80472 80747 276 + 112         hypothetical protein  
249 80760 81521 762 + 12         Phage antirepressor protein  
250 81561 81749 189 + 39         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|469605.3.peg.239 DNA repair protein radC
MPVIQLYEIDNDYIDYLRQFDSKVLNHSGITYSKTRKYLGVLLDINNCKYLAPLSSPEPK
SDYINGQIRKSIIPIIRIVKLGTSNILLGKIKLSSMIPVYDMSVLSYYDINKEQDLKYKN
LVIDELRFIYANKNLILKNANKLYQQKIKNMSMGYVQTTVDFILLEQKAKLYKK

MD5 = a878ce62f53d0aa382e76955fa403f6b


  DNA Sequence

>fig|469605.3.peg.239 DNA repair protein radC
atgccagttattcaattatatgagattgacaacgattatattgactatttgcgacaattt
gattctaaggtattgaatcattcagggataacctatagcaaaactcgaaaatatttaggt
gttttgttagatataaataactgtaaataccttgcacctctttcttctccagaaccaaaa
tcagattatatcaacggacagattagaaaaagtataattcctatcattagaatcgtgaag
ttgggaacttctaatattttgctaggtaaaataaaattaagtagtatgattcctgtatac
gatatgtctgtacttagttactatgatattaacaaagagcaggatttaaaatataaaaat
ttagttatagatgagcttaggtttatatacgctaataaaaatcttatcttgaaaaatgcg
aataaattatatcagcaaaaaataaagaatatgtcaatgggatatgtacaaacaacagtt
gattttatattattagaacaaaaagcaaaactatataaaaaatga


  DNA with Flanking Sequence

>fig|469605.3.peg.239 DNA repair protein radC
aggagcaacttttatagcaagagaagttggtagaggaaaaaagagacaactagaatttct
atatgtattaaaacaatctgcaaagattaaagccagacctttcttgggtatcaataccgc
aatgcaagaaagatacagacgaattgcagaagaattttatagaaaagcttggaaaaagta
aaaaagtaaaaaaataagttgattttttgtaagaaaaaatgtatacttcaagtaagagaa
aattcttcccttgactatcgaggttggggataggacttactaggaagacagtagggaccc
atatgggggtcaggataataccatattcttgctgatgaagaacagctaaaaagtctttca
gtcttcaaaaaaggtgttccactaccttaaatgaaggagttataaattcaggtgttgcac
cacctttaagtgaagcagttttaaattcaaaggagctaccattataatttatggtagctt
tctttatctagggggattttatgccagttattcaattatatgagattgacaacgattata
ttgactatttgcgacaatttgattctaaggtattgaatcattcagggataacctatagca
aaactcgaaaatatttaggtgttttgttagatataaataactgtaaataccttgcacctc
tttcttctccagaaccaaaatcagattatatcaacggacagattagaaaaagtataattc
ctatcattagaatcgtgaagttgggaacttctaatattttgctaggtaaaataaaattaa
gtagtatgattcctgtatacgatatgtctgtacttagttactatgatattaacaaagagc
aggatttaaaatataaaaatttagttatagatgagcttaggtttatatacgctaataaaa
atcttatcttgaaaaatgcgaataaattatatcagcaaaaaataaagaatatgtcaatgg
gatatgtacaaacaacagttgattttatattattagaacaaaaagcaaaactatataaaa
aatgaggatagtaaattgtcctctttttttatttatgtaagaatattagaaaaggttttt
taccaatatttttgataaaaaacctataaaaatgattagttatttaatttttcatctaag
gatttacctggtttaaatttcatactctttttagcaggtattcttacttcttctccagtt
ttaggatttcttcctagcctttcagctttttctactacctcaaatttcccaaaacctgaa
aataggatattttcatttaataatgctacttcttctaatgtttctaaaaaggaagtcatt
gctttttccgcttctgttttagtagaaaattttcctttcctaaaatataattcgataaat
tctttttttgtcatgcttattctccttttcttttttttagttttttaagtatagtataat
ctataacaaaagtcaatatataataaaaaatgatttaaatttgattttttaagtaaatta
tgatacaaaatataatggaaatgaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
gi|257451487 Fusobacterium sp. 3_1_5R NCBI   ToxN
ref|ZP_05616786.1 Fusobacterium sp. 3_1_5R RefSeq   ToxN


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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