The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|451515.3.peg.2450: Staphylococcus aureus subsp. aureus USA300_FPR3757

This feature in The SEED Viewer

NCBI Taxonomy Id: 451515

Current Assignment: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Translate Function Assignments


Context on contig NC_007793 from base 2461355 to 2472344 (10990 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2443 2462002 2461355 648 -           FIG01108220: hypothetical protein locus|SAUSA300_2289, protein_id|YP_494924.1, gi|87162419, geneID|3915266
2444 2461994 2462116 123 + -9         Doubtful CDS  
2445 2462170 2462313 144 + 53         Doubtful CDS  
2446 2462401 2463009 609 + 87     1: 8   DNA-3-methyladenine glycosylase II (EC 3.2.2.21) locus|SAUSA300_2290, protein_id|YP_494925.1, gi|87160626, geneID|3915061
2447 2463346 2464554 1209 + 336         Sodium/glutamate symport protein gene_name|gltS, locus|SAUSA300_2291, protein_id|YP_494926.1, gi|87160999, geneID|3913565
2448 2465651 2464602 1050 - 47     4: 10 5 6 7   Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) gene_name|fni, locus|SAUSA300_2292, protein_id|YP_494927.1, gi|87160251, geneID|3915142
2449 2466629 2465682 948 - 30     1: 4   Magnesium and cobalt transport protein CorA gene_name|corA, locus|SAUSA300_2293, protein_id|YP_494928.1, gi|87161343, geneID|3912860
2450 2466726 2467217 492 + 96     7: 15 12 11 13 2 9 14   3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) locus|SAUSA300_2294, protein_id|YP_494929.1, gi|87160947, geneID|3913787
2451 2467214 2467633 420 + -4         FIG01107838: hypothetical protein locus|SAUSA300_2295, protein_id|YP_494930.1, gi|87159959, geneID|3913846
2452 2468598 2467741 858 - 107     1: 3   putative esterase locus|SAUSA300_2296, protein_id|YP_494931.1, gi|87162082, geneID|3914625
2453 2468869 2469507 639 + 270         FIG01108339: hypothetical protein locus|SAUSA300_2297, protein_id|YP_494932.1, gi|87162144, geneID|3914691
2454 2471684 2469753 1932 - 245     1: 1   Membrane component of multidrug resistance system locus|SAUSA300_2298, protein_id|YP_494933.1, gi|87161734, geneID|3913020
2455 2472344 2471697 648 - 12     1: 1   Multidrug resistance protein [function not yet clear] locus|SAUSA300_2299, protein_id|YP_494934.1, gi|87160414, geneID|3913132

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Acetyl-CoA_fermentation_to_Butyrate OlgaZ 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Butyrate_metabolism_cluster VeronikaV 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Isoleucine_degradation OlgaZ 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Lysine_fermentation_MCB_432 gjo 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Polyhydroxybutyrate_metabolism OlgaV 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Valine_degradation OlgaZ 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Lysine_fermentation_exploration ZALLOT_Remi_user 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)


  Protein Sequence

>fig|451515.3.peg.2450 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
MVIIKQLFTHTQTVTSEFIDHNNHMHDANYNIIFSDVVNRFNYSHGLSLKERENLAYTLF
TLEEHTTYLSELSLGDVFTVTLYIYDYDYKRLHLFLTLTKEDGTLASTNEVMMMGINQHT
RRSDAFPESFSTQIAHYYKNQSTITWPEQLGHKIAIPHKGALK

MD5 = 5c3d42daef7b6d120fd543ea5b12c53f


  DNA Sequence

>fig|451515.3.peg.2450 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
atggttattatcaaacaactttttacacatactcaaaccgtaacatctgaattcattgac
cataacaatcatatgcatgatgcaaattataatatcatttttagtgacgtcgtgaatcgt
tttaattacagccacggtctttctttaaaagaacgcgaaaatttagcatatacgctattt
acactagaagaacatacgacatacctctcagaattgtctcttggcgatgtatttactgtt
actttatatatttatgattacgattataagcggttgcatttatttttaacattaactaaa
gaagatggtacactagcatcaacaaatgaagtaatgatgatgggaattaatcagcacaca
cgtcgttctgatgcttttcctgaatcattttcaacacaaatagcacactattataaaaat
caatcaactatcacttggcctgaacaattaggacataaaatagcaattccacacaaagga
gcattaaaatga


  DNA with Flanking Sequence

>fig|451515.3.peg.2450 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
aatatgacgacatctgcacaatctaattctgcatctaatgtattcatatacttatagact
actttatttaatgattccaacgtttgatgatgatatgttactaatacattgtcttgtata
aaaatatttagtgctattggtgaatagtttgaccccataatactatggaatactaagtat
tgataatctttataagatttatatttagctcgtggcataccgttaattgcatcatccact
tctaaatcattaaaattaaaatgtgctttaaaccattcattttcttgttcattcggttca
tcaaaatcataccaaacaatagtcgcatcttttggtatctctttgatatcatcaactact
ttaaacggttcatatgtagtttgataccgtatctttaaagccatcgatactccccctaaa
taacgaattctctattattttatcatgaattaaataacgtgtatgtcttaatttatttta
gtatgatagtcactaaggagatggttattatcaaacaactttttacacatactcaaaccg
taacatctgaattcattgaccataacaatcatatgcatgatgcaaattataatatcattt
ttagtgacgtcgtgaatcgttttaattacagccacggtctttctttaaaagaacgcgaaa
atttagcatatacgctatttacactagaagaacatacgacatacctctcagaattgtctc
ttggcgatgtatttactgttactttatatatttatgattacgattataagcggttgcatt
tatttttaacattaactaaagaagatggtacactagcatcaacaaatgaagtaatgatga
tgggaattaatcagcacacacgtcgttctgatgcttttcctgaatcattttcaacacaaa
tagcacactattataaaaatcaatcaactatcacttggcctgaacaattaggacataaaa
tagcaattccacacaaaggagcattaaaatgacagatgcattacaacaaaagattcatat
cgaattactagatttattagatgatgttaagtttgaattaacagaattaaatgcacaaaa
agggttatacattaacggaccagcaaatcagctacttaagcgtggcgtgcatatggctta
tgttcaaggacaaaagcaagccatcgataatattatgactattgtggaacaacagcttga
agatcaacatttcctagaacattatgataaatttcaaaatgaggttgctcatcgcaatta
tgataaaacagctaactttgcagaacttagtgatattccacgtcaattcgataatttttt
agatcaattttatcaaattaaagggcaatactttatcatcacacatatcaatacacttat
tggtgattttcactcagaagctcattaacaattagtctatataacccttgctatattttc
aaaaacaaaacccaattacgttttcatgtcaaatatcatcttgcatgaaatc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search