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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|451515.3.peg.2448: Staphylococcus aureus subsp. aureus USA300_FPR3757

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NCBI Taxonomy Id: 451515

Current Assignment: Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
Translate Function Assignments


Context on contig NC_007793 from base 2459000 to 2471684 (12685 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2441 2460232 2459000 1233 -           ABC-type Na+ efflux pump, permease component locus|SAUSA300_2287, protein_id|YP_494922.1, gi|87161971, geneID|3914483
2442 2461124 2460225 900 - -8         ABC transporter, ATP-binding protein locus|SAUSA300_2288, protein_id|YP_494923.1, gi|87161206, geneID|3912781
2443 2462002 2461355 648 - 230         FIG01108220: hypothetical protein locus|SAUSA300_2289, protein_id|YP_494924.1, gi|87162419, geneID|3915266
2444 2461994 2462116 123 + -9         Doubtful CDS  
2445 2462170 2462313 144 + 53         Doubtful CDS  
2446 2462401 2463009 609 + 87     1: 3   DNA-3-methyladenine glycosylase II (EC 3.2.2.21) locus|SAUSA300_2290, protein_id|YP_494925.1, gi|87160626, geneID|3915061
2447 2463346 2464554 1209 + 336         Sodium/glutamate symport protein gene_name|gltS, locus|SAUSA300_2291, protein_id|YP_494926.1, gi|87160999, geneID|3913565
2448 2465651 2464602 1050 - 47     4: 2 7 14 4   Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) gene_name|fni, locus|SAUSA300_2292, protein_id|YP_494927.1, gi|87160251, geneID|3915142
2449 2466629 2465682 948 - 30     1: 10   Magnesium and cobalt transport protein CorA gene_name|corA, locus|SAUSA300_2293, protein_id|YP_494928.1, gi|87161343, geneID|3912860
2450 2466726 2467217 492 + 96     7: 15 6 11 5 13 12 8   3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) locus|SAUSA300_2294, protein_id|YP_494929.1, gi|87160947, geneID|3913787
2451 2467214 2467633 420 + -4         FIG01107838: hypothetical protein locus|SAUSA300_2295, protein_id|YP_494930.1, gi|87159959, geneID|3913846
2452 2468598 2467741 858 - 107     1: 1   putative esterase locus|SAUSA300_2296, protein_id|YP_494931.1, gi|87162082, geneID|3914625
2453 2468869 2469507 639 + 270         FIG01108339: hypothetical protein locus|SAUSA300_2297, protein_id|YP_494932.1, gi|87162144, geneID|3914691
2454 2471684 2469753 1932 - 245     1: 9   Membrane component of multidrug resistance system locus|SAUSA300_2298, protein_id|YP_494933.1, gi|87161734, geneID|3913020

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Archaeal_lipids gjo Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
Isoprenoid_Biosynthesis OlgaZ Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
Isoprenoid_Biosynthesis:_Interconversions RossO Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
archaeal_lipids_bobik Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)


  Protein Sequence

>fig|451515.3.peg.2448 Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG

MD5 = 64b4398cf6a7aebe8594cdd05c2df4c0


  DNA Sequence

>fig|451515.3.peg.2448 Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
atgagtgattttcaaagagaacagagaaaaaatgaacatgttgaaatagcaatggcccaa
tctgacgcaatgcattcagattttgataagatgcgttttgtgcatcattctatcccatca
attaatgtaaatgatatcgatttgacatcacagacgcctgacttaacgatggcatatccg
gtttatattaatgcaatgacgggtggtagcgagtggacgaaaaacatcaatgaaaagcta
gctgtagttgcaagagaaactggcttagcgatggcagttggatcaacacatgcggcattg
agaaatccacgcatggctgagacgtttacgattgcgcgaaaaatgaatcctgaaggcatg
atttttagcaatgttggtgcggacgtaccagtagaaaaggctttggaagcagttgaatta
cttgaggcacaagcgttacaaatccatgttaattctcctcaagaattagttatgcctgaa
gggaatcgtgaatttgtgacttggttagataatatagcgtcgattgtatcacgagtgtct
gttccagtcattataaaagaagttggatttggtatgagcaaagaattaatgcatgactta
caacaaataggcgtcaagtatgtcgatgttagtggcaaaggtggtactaactttgtagat
attgaaaatgaacgtcgtgcaaataaagatatggattacttatcatcatggggacagtct
acagttgagtcattacttgaaacaacggcttatcaaagcgaaatttcagttttcgcgagt
ggtggtttacgtacaccactcgatgcaattaaaagtttagcacttggtgcaaaggcaact
ggtatgtcacgtccgtttttaaatcaagttgaaaataatggcattgcacatacagtagct
tatgtagaatcatttattgaacacatgaaatcaataatgacgatgttagatgctaaaaat
attgacgacttaacacaaaaacaaatcgtatttagtccggaaatattgtcatggatagaa
caacgtaacttgaatatacatcgaggataa


  DNA with Flanking Sequence

>fig|451515.3.peg.2448 Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)
accgccatgtagatgatcgctttaataaaatggtcatggatagtgtctttaagttacgtt
cggatttgattaaagtaaaacgtgtactgtttcctatgcaagagctaattgatacaatga
aacaaaatggtgatttgattatagataataaacattcgctatacattcaacatatcgatg
accacttgattaagcaacgtaatatcattcgtactgctcaagaaatgacaaacgaaatac
gagaaaattttgagtcatacacgtcatttagaatgaatagtattatgcaagtactgacat
tagtatcagttatattttcaccgttaacattcatagctgggatttatggtatgaactttg
taaatatgccggcattacatttacattatggatattatatttgcttagctgtaatgtttg
ttatagctgtcgtattaatcatctttttcagacgtaaaaaatggttttaaattagaaatg
acgaaaaggtaggtttaatcatgagtgattttcaaagagaacagagaaaaaatgaacatg
ttgaaatagcaatggcccaatctgacgcaatgcattcagattttgataagatgcgttttg
tgcatcattctatcccatcaattaatgtaaatgatatcgatttgacatcacagacgcctg
acttaacgatggcatatccggtttatattaatgcaatgacgggtggtagcgagtggacga
aaaacatcaatgaaaagctagctgtagttgcaagagaaactggcttagcgatggcagttg
gatcaacacatgcggcattgagaaatccacgcatggctgagacgtttacgattgcgcgaa
aaatgaatcctgaaggcatgatttttagcaatgttggtgcggacgtaccagtagaaaagg
ctttggaagcagttgaattacttgaggcacaagcgttacaaatccatgttaattctcctc
aagaattagttatgcctgaagggaatcgtgaatttgtgacttggttagataatatagcgt
cgattgtatcacgagtgtctgttccagtcattataaaagaagttggatttggtatgagca
aagaattaatgcatgacttacaacaaataggcgtcaagtatgtcgatgttagtggcaaag
gtggtactaactttgtagatattgaaaatgaacgtcgtgcaaataaagatatggattact
tatcatcatggggacagtctacagttgagtcattacttgaaacaacggcttatcaaagcg
aaatttcagttttcgcgagtggtggtttacgtacaccactcgatgcaattaaaagtttag
cacttggtgcaaaggcaactggtatgtcacgtccgtttttaaatcaagttgaaaataatg
gcattgcacatacagtagcttatgtagaatcatttattgaacacatgaaatcaataatga
cgatgttagatgctaaaaatattgacgacttaacacaaaaacaaatcgtatttagtccgg
aaatattgtcatggatagaacaacgtaacttgaatatacatcgaggataaataaaagagg
aggcgaaggcctcctcttttatttatgagtttggtgtttaactaaaccattgtatgaatc
ccataatgactataacaccaattaaatcgattaagaatgcaccaacaataggtacaacta
aatatgctttaggtgagtttccatattttttagtaataacatctaaatttgccatggcat
ttggcgttgcaccaagcccatgaccgataaaaccacctaccattactgcagcatcataat
cttttcctaaacctctaaataaaattaaaacagcaaataaaatcataacgacaacttgaa
ctaaaacgataataataagaggtatagcaagtttataaatttcgattaattgaatgctca
ttagcgcaagagataagaaaatacctaatgcgacatcgccaatttgattagtaattttta
aatctacaatattaaaattaaaactttcagagatatttcggacaataacagctacaaata
atgagccaac


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  Attributes

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  Protein Families

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