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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|451515.3.peg.2441: Staphylococcus aureus subsp. aureus USA300_FPR3757

This feature in The SEED Viewer

NCBI Taxonomy Id: 451515

Current Assignment: ABC-type Na+ efflux pump, permease component
Translate Function Assignments


Context on contig NC_007793 from base 2453108 to 2465651 (12544 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2434 2454043 2453108 936 -       4: 9 11 3 10   Formiminoglutamase (EC 3.5.3.8) gene_name|hutG, locus|SAUSA300_2281, protein_id|YP_494916.1, gi|87160628, geneID|3915063
2435 2454333 2455592 1260 + 289       dlit(16923896) Membrane protein SAV2335 locus|SAUSA300_2282, protein_id|YP_494917.1, gi|87161379, geneID|3914149
2436 2456344 2455658 687 - 65     3: 4 12 2   Ribose-5-phosphate isomerase A (EC 5.3.1.6) gene_name|rpiA, locus|SAUSA300_2283, protein_id|YP_494918.1, gi|87159890, geneID|3914936
2437 2456518 2457171 654 + 173         Uncharacterized protein conserved in bacteria locus|SAUSA300_2284, protein_id|YP_494919.1, gi|87160599, geneID|3915218
2438 2457414 2457301 114 - 129         FIG01108134: hypothetical protein  
2439 2458426 2457407 1020 - -8         Aldose 1-epimerase (EC 5.1.3.3) gene_name|galM, locus|SAUSA300_2285, protein_id|YP_494920.1, gi|87161694, geneID|3914459
2440 2458782 2458456 327 - 29         Protein of unknown function UPF0060 locus|SAUSA300_2286, protein_id|YP_494921.1, gi|87162407, geneID|3915254
2441 2460232 2459000 1233 - 217       ABC-type Na+ efflux pump, permease component locus|SAUSA300_2287, protein_id|YP_494922.1, gi|87161971, geneID|3914483
2442 2461124 2460225 900 - -8 37     ABC transporter, ATP-binding protein locus|SAUSA300_2288, protein_id|YP_494923.1, gi|87161206, geneID|3912781
2443 2462002 2461355 648 - 230         FIG01108220: hypothetical protein locus|SAUSA300_2289, protein_id|YP_494924.1, gi|87162419, geneID|3915266
2444 2461994 2462116 123 + -9         Doubtful CDS  
2445 2462170 2462313 144 + 53         Doubtful CDS  
2446 2462401 2463009 609 + 87     1: 8   DNA-3-methyladenine glycosylase II (EC 3.2.2.21) locus|SAUSA300_2290, protein_id|YP_494925.1, gi|87160626, geneID|3915061
2447 2463346 2464554 1209 + 336         Sodium/glutamate symport protein gene_name|gltS, locus|SAUSA300_2291, protein_id|YP_494926.1, gi|87160999, geneID|3913565
2448 2465651 2464602 1050 - 47     4: 7 5 1 6   Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) gene_name|fni, locus|SAUSA300_2292, protein_id|YP_494927.1, gi|87160251, geneID|3915142

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|451515.3.peg.2441 ABC-type Na+ efflux pump, permease component
MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINMFDDGPDKIGVAAPNEQ
IYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIKVNQNRTLQGTIISEKRVS
HEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVDNKVISNDEVDKVSEGQKIFN
YALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMIITSISPIQHIFAKILGVIAVAV
TQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQIIIVGIISSIVGITAYVLLAAILG
SLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNPDGQLALITSYIPFLAPFQLVVRAQTS
GLQIYEVILSSLISIVMVAVLIWIAIKTYKDSVLTFERGLFNSMKRVFKK

MD5 = 715fa9674a9bdf80cd2e9ef8195e73d2


  DNA Sequence

>fig|451515.3.peg.2441 ABC-type Na+ efflux pump, permease component
atgcataagttttgggcgacatttactttgacatatatcaaaaaaattaaagctaaatca
tttgtaatttttatgattattattgctgccttaatgattggcctatctaacattgataag
attattaacatgtttgatgatggtccagataaaattggtgtagcagcaccgaatgaacaa
atctataaggttttcaagcaacaggcgaatacatttcatagtgatgctaagtttactaaa
gtttctatagaagatgctgaaaaagaagtaaaaaaacataaacttgataaagcttatatt
atcaaggtgaatcaaaatcgcacgttacaagggacaatcattagtgagaagcgagtaagt
catgaagattcacaaaaagtacaagcactgcttacagctattcaaacaaatatggtagcc
ggggaattaaatatcaacaaagaagacttacaaaaattacaagcacaaagtaaagttgat
aataaggtgatttctaatgatgaagtcgataaagtatcagaaggacaaaagattttcaac
tatgctttagcttatggcattatctttctaatgttcttcattgttttaaattatgcatct
caaatagctatggaaattgctagtgagaaaacatcgcgtgtcattgaaatgattattaca
agtatttcaccaatccaacatatttttgctaaaattttaggcgttatagcagttgccgtg
actcagattattttaattgtattgatggcagttatatgcatttttgcctttgacttaaaa
gacttgctacaaggttttaacgtggaaatgaatcaattgtcttggcaaattattattgtc
ggaattataagtagtattgttggaattacggcgtatgtattacttgcagccatcctcgga
tcattaacatctagaatagaagatttaaatcaatctttgatgccactgacattacttggt
atgattgcattttatatcgcgatattcacgataaataatcctgatggacaacttgcttta
atcacaagttatattccgtttttagcgccatttcaattagttgtacgcgctcaaacttca
gggcttcaaatatatgaggtcatcttaagttctttaatctcaattgtaatggtagctgtc
ttgatatggattgcaattaaaacatataaagattcagtacttacatttgaacgtggctta
tttaattcaatgaaacgtgtatttaaaaaataa


  DNA with Flanking Sequence

>fig|451515.3.peg.2441 ABC-type Na+ efflux pump, permease component
atcaaaagggaatcaacaaaaaattcagctgttagcaagtatgttacataaaccagaatt
actaatattagatgagcctttcagtggtctagacccagttaatgttgagttattaaaaga
agcagttaaagacttaaatgattggggcagtacaatcgtttatagttctcaccgtatgga
gcatgttgaagaattatgtgatgatgtttgtattttagataaaggtcaacttgttgtttc
tggtgatatcaatcatgtacgtgcatctaatggtaacaagaaagttgtcattgaatcaga
aacaacactaccagatttaacaaacattagaggcatcattcatagtgaaaacatgaagca
aggtcttcagttgacgattgagaatgaagacgtagccaaagatatttatcaagttgtggc
acatcaaggttatgttaaacgattccaagttgtagaaccatcattacaagatatattcat
tgagaaggttggtggcaaggatgcataagttttgggcgacatttactttgacatatatca
aaaaaattaaagctaaatcatttgtaatttttatgattattattgctgccttaatgattg
gcctatctaacattgataagattattaacatgtttgatgatggtccagataaaattggtg
tagcagcaccgaatgaacaaatctataaggttttcaagcaacaggcgaatacatttcata
gtgatgctaagtttactaaagtttctatagaagatgctgaaaaagaagtaaaaaaacata
aacttgataaagcttatattatcaaggtgaatcaaaatcgcacgttacaagggacaatca
ttagtgagaagcgagtaagtcatgaagattcacaaaaagtacaagcactgcttacagcta
ttcaaacaaatatggtagccggggaattaaatatcaacaaagaagacttacaaaaattac
aagcacaaagtaaagttgataataaggtgatttctaatgatgaagtcgataaagtatcag
aaggacaaaagattttcaactatgctttagcttatggcattatctttctaatgttcttca
ttgttttaaattatgcatctcaaatagctatggaaattgctagtgagaaaacatcgcgtg
tcattgaaatgattattacaagtatttcaccaatccaacatatttttgctaaaattttag
gcgttatagcagttgccgtgactcagattattttaattgtattgatggcagttatatgca
tttttgcctttgacttaaaagacttgctacaaggttttaacgtggaaatgaatcaattgt
cttggcaaattattattgtcggaattataagtagtattgttggaattacggcgtatgtat
tacttgcagccatcctcggatcattaacatctagaatagaagatttaaatcaatctttga
tgccactgacattacttggtatgattgcattttatatcgcgatattcacgataaataatc
ctgatggacaacttgctttaatcacaagttatattccgtttttagcgccatttcaattag
ttgtacgcgctcaaacttcagggcttcaaatatatgaggtcatcttaagttctttaatct
caattgtaatggtagctgtcttgatatggattgcaattaaaacatataaagattcagtac
ttacatttgaacgtggcttatttaattcaatgaaacgtgtatttaaaaaataaaattgat
gagagtgacacacatttatcatataaaatgatgatgaaagcgtgttactcttattttttt
atatttagctatagaataatgtctaaaaaagtgtacaatatgaatgtgaaaacgaacttt
ttaaaatgggaatgtgaagtaagaagaaatgtaaacaaatgatatgtagccgatagatta
ttgatagcaaatgtgtgatggagtgatttcatgttatatccgatttttatatttatatta
gctggcttatgtgaaataggtgggggatacctgatttggctgtggcttagggaaggacag
tcttcacttgttgggctaataggcggtgcgatactcatgttatatggtgtcattgcgaca
tttcaatcatttccatcattcggaagagtatatgcagcatatggtggcgtatttatcatc
atgagtttgatttttgcgatggtcgtagataaacaaatgccagataaatatgatgttatc
ggtgcaatcattt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
37 fig|451515.3.peg.2442 ABC transporter, ATP-binding protein


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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