The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki] [GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]
|
![]() |
Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
2432 | 2451427 | 2452311 | 885 | + | ![]() |
Transcriptional regulator, LysR family | locus|SAUSA300_2279, protein_id|YP_494914.1, gi|87160284, geneID|3913491 | |||||
2433 | 2452433 | 2452852 | 420 | + | 121 | ![]() |
1: 7 | dlit(16399398) | Fosfomycin resistance protein FosB | gene_name|fosB, locus|SAUSA300_2280, protein_id|YP_494915.1, gi|87161002, geneID|3913568 | ||
2434 | 2454043 | 2453108 | 936 | - | 255 | ![]() |
4: 4 9 1 6 | Formiminoglutamase (EC 3.5.3.8) | gene_name|hutG, locus|SAUSA300_2281, protein_id|YP_494916.1, gi|87160628, geneID|3915063 | |||
2435 | 2454333 | 2455592 | 1260 | + | 289 | ![]() |
dlit(16923896) | Membrane protein SAV2335 | locus|SAUSA300_2282, protein_id|YP_494917.1, gi|87161379, geneID|3914149 | |||
2436 | 2456344 | 2455658 | 687 | - | 65 | ![]() |
3: 2 8 3 | Ribose-5-phosphate isomerase A (EC 5.3.1.6) | gene_name|rpiA, locus|SAUSA300_2283, protein_id|YP_494918.1, gi|87159890, geneID|3914936 | |||
2437 | 2456518 | 2457171 | 654 | + | 173 | ![]() |
Uncharacterized protein conserved in bacteria | locus|SAUSA300_2284, protein_id|YP_494919.1, gi|87160599, geneID|3915218 | ||||
2438 | 2457414 | 2457301 | 114 | - | 129 | ![]() |
FIG01108134: hypothetical protein | |||||
2439 | 2458426 | 2457407 | 1020 | - | -8 | ![]() |
Aldose 1-epimerase (EC 5.1.3.3) | gene_name|galM, locus|SAUSA300_2285, protein_id|YP_494920.1, gi|87161694, geneID|3914459 | ||||
2440 | 2458782 | 2458456 | 327 | - | 29 | ![]() |
Protein of unknown function UPF0060 | locus|SAUSA300_2286, protein_id|YP_494921.1, gi|87162407, geneID|3915254 | ||||
2441 | 2460232 | 2459000 | 1233 | - | 217 | ![]() |
ABC-type Na+ efflux pump, permease component | locus|SAUSA300_2287, protein_id|YP_494922.1, gi|87161971, geneID|3914483 | ||||
2442 | 2461124 | 2460225 | 900 | - | -8 | ![]() |
ABC transporter, ATP-binding protein | locus|SAUSA300_2288, protein_id|YP_494923.1, gi|87161206, geneID|3912781 | ||||
2443 | 2462002 | 2461355 | 648 | - | 230 | ![]() |
FIG01108220: hypothetical protein | locus|SAUSA300_2289, protein_id|YP_494924.1, gi|87162419, geneID|3915266 | ||||
2444 | 2461994 | 2462116 | 123 | + | -9 | ![]() |
Doubtful CDS | |||||
2445 | 2462170 | 2462313 | 144 | + | 53 | ![]() |
Doubtful CDS | |||||
2446 | 2462401 | 2463009 | 609 | + | 87 | ![]() |
1: 5 | DNA-3-methyladenine glycosylase II (EC 3.2.2.21) | locus|SAUSA300_2290, protein_id|YP_494925.1, gi|87160626, geneID|3915061 |
Annotation History / View All Related Annotations | Help on Annotations |
Score | Peg | Function |
---|
Key Link Explains Key |
Value |
---|
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
> Show tool descriptions