The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
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1961 | 40089 | 44543 | 4455 | + | ![]() |
1: 1 | Phage tail, tail length tape-measure protein | locus|ANACOL_01854, protein_id|ZP_02442562.1, gi|167770509 | ||||
1962 | 45146 | 45012 | 135 | - | 468 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01855, protein_id|ZP_02442563.1, gi|167770510, InterPro:IPR007829 | |||
1963 | 45554 | 46489 | 936 | + | 407 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01856, protein_id|ZP_02442564.1, gi|167770511 | |||
1964 | 47274 | 46990 | 285 | - | 500 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01858, protein_id|ZP_02442566.1, gi|167770513 | |||
1965 | 48571 | 49317 | 747 | + | 1296 | ![]() |
Phage antirepressor protein | locus|ANACOL_01862, protein_id|ZP_02442570.1, gi|167770517 | ||||
1966 | 49596 | 49474 | 123 | - | 156 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01863, protein_id|ZP_02442571.1, gi|167770518 | |||
1967 | 50169 | 52313 | 2145 | + | 572 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01865, protein_id|ZP_02442573.1, gi|167770520 | |||
1968 | 52674 | 52495 | 180 | - | 181 | ![]() |
1: 1 | hypothetical protein | ||||
1969 | 52735 | 54207 | 1473 | + | 60 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01867, protein_id|ZP_02442575.1, gi|167770522 | |||
1970 | 54218 | 55030 | 813 | + | 10 | ![]() |
1: 1 | hypothetical protein | locus|ANACOL_01868, protein_id|ZP_02442576.1, gi|167770523 |
Annotation History / View All Related Annotations | Help on Annotations |
Score | Peg | Function |
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Key Link Explains Key |
Value |
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Compare Regions |
Tool | Description |
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General Tools | |
Psi-Blast | NCBI's psi-blast is used to locate distant similarities |
Transmembrane Predictions | |
TMpred | Tool for Predicting Transmembrane regions |
TMHMM | Prediction of transmembrane helices in proteins |
Protein Signals for Gram negative bacteria | |
Gram negative PSORT | Prediction of protein localization sites |
Gram negative SignalP | Predicts the presence and location of signal peptide cleavage sites |
Protein Signals for Gram positive bacteria | |
Gram positive PSORT | Prediction of protein localization sites |
Gram positive SignalP | Predicts the presence and location of signal peptide cleavage sites |
Other useful tools | |
LipoP | Prediction of lipoproteins and signal peptides in Gram negative bacteria |
Radar | Rapid Automatic Detection and Alignment of Repeats in protein sequences |
PPSearch | Search for protein motifs against all patterns stored in the PROSITE pattern database |
Gram negative CELLO | Subcellular localization predictor at National Chiao Tung University |
Gram positive CELLO | Subcellular localization predictor at National Chiao Tung University |
ProDom | A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
PDB | An Information Portal to Biological Macromolecular Structures |
For Specific Organisms | |
RNAFold | The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. |