The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|445972.6.peg.1962: Anaerotruncus colihominis DSM 17241

This feature in The SEED Viewer

NCBI Taxonomy Id: 445972

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_DS544183 from base 39765 to 49596 (9832 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1960 39765 40034 270 +       1: 1   hypothetical protein locus|ANACOL_01853, protein_id|ZP_02442561.1, gi|167770508
1961 40089 44543 4455 + 54     1: 1   Phage tail, tail length tape-measure protein locus|ANACOL_01854, protein_id|ZP_02442562.1, gi|167770509
1962 45146 45012 135 - 468     1: 1   hypothetical protein locus|ANACOL_01855, protein_id|ZP_02442563.1, gi|167770510, InterPro:IPR007829
1963 45554 46489 936 + 407     1: 1   hypothetical protein locus|ANACOL_01856, protein_id|ZP_02442564.1, gi|167770511
1964 47274 46990 285 - 500     1: 1   hypothetical protein locus|ANACOL_01858, protein_id|ZP_02442566.1, gi|167770513
1965 48571 49317 747 + 1296         Phage antirepressor protein locus|ANACOL_01862, protein_id|ZP_02442570.1, gi|167770517
1966 49596 49474 123 - 156     1: 1   hypothetical protein locus|ANACOL_01863, protein_id|ZP_02442571.1, gi|167770518

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DHQS_phosphatase_fusion Thamm_Antje_user hypothetical protein


  Protein Sequence

>fig|445972.6.peg.1962 hypothetical protein
MGVHKFYEGKILLGIVYLCTGGLLGIGWLIDLITLLFKPNPYYP

MD5 = 95679008de270751aa03e0b744dcbc56


  DNA Sequence

>fig|445972.6.peg.1962 hypothetical protein
ttgggcgtgcataaattttatgaaggcaaaattttacttggaattgtttatttatgtaca
ggcggtcttttaggtattggatggctgatcgatttaattacgctcttgtttaaacccaac
ccctattatccgtaa


  DNA with Flanking Sequence

>fig|445972.6.peg.1962 hypothetical protein
gcttgtttcttcatgggtttgatttgtatcattggcacagccagcaaatccgattaacat
aattgaggttagacaacatatcacttttttcattctctttcctccaccatttaaaattta
cctttagcaccaaaattatactttttatagtgtatattgtcaagataaaaccaaatttta
gtagacatcagtataaatatattgtataatattgaaaaagtttaaaagataatggttatt
gattggaggaatagaaaatgctttgtcctaaatgcggcacagaatcaacgggaaagtttt
gtccttcttgtggaactcccatgtcgcaggatcaagatatttcagttactactgcatcag
caaatcaagccgctccacaaccgccaacaattattataaataacacgaatacaaatacga
atacagtaactgcatccggtccaagtgtaaaagcaaaaaataaatgggtcgcgtttttcc
tttgtcttttccttggcattttgggcgtgcataaattttatgaaggcaaaattttacttg
gaattgtttatttatgtacaggcggtcttttaggtattggatggctgatcgatttaatta
cgctcttgtttaaacccaacccctattatccgtaaaaaacccaatggggggaagtaaacc
atgacatgcaaaaattgcggcaaggaaatcccggccgaatttgaaaagcttggattgtgc
tctgattgtgccttaaacatcttatcaacccaaaatagtacgaatccagtgcaagaatca
aaagaggttcgattagttaaaacctataaccgttcaaatgttgttgaagtcctggatgtt
cttgtgaaactgattattttggctggaactattggaggcatcatattatttcttgctttt
ctgctttccactttagatagggcctcattaccattcaatcaacttctcactctaattatt
gcatttattttaatggcactttctactatgttatctgcatcattattaaaagccatcagc
gaaatattagatacattatatgatataagagataaactgcgatagaacaggaacgccccg
taaataacggggcgttcctgttcttatataattgaaccgatcatgcggttatatt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search