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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.3180: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_GG704769 from base 336789 to 347314 (10526 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3173 336789 337535 747 +           hypothetical protein  
3174 337549 337869 321 + 13         hypothetical protein  
3175 337882 338301 420 + 12         hypothetical protein  
3176 338388 338888 501 + 86         FIG00515953: hypothetical protein  
3177 338885 340714 1830 + -4         TrsK-like protein  
3178 340933 341151 219 + 218         Maff2 family protein # long form  
3179 341221 342090 870 + 69         Tn5252, Orf23  
3180 342492 342361 132 - 270         hypothetical protein  
3181 342457 344925 2469 + -36         TrsE-like protein  
3182 344922 345305 384 + -4         hypothetical protein  
3183 345598 347034 1437 + 292         NLP/P60 family protein  
3184 347063 347314 252 + 28         FIG01032253: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.3180 hypothetical protein
MQPFFYCGEQCHTPPYRAFPAALIRHKSCWSGKVAALDGSQLL

MD5 = ed714e94694f1c49d8431cbaa438cda0


  DNA Sequence

>fig|411471.5.peg.3180 hypothetical protein
atgcagccatttttttattgcggtgaacaatgtcatacacctccttatcgagcatttcct
gccgctttaatacggcataaaagttgttggtctggtaaggtcgctgctttggacggatca
cagctactttga


  DNA with Flanking Sequence

>fig|411471.5.peg.3180 hypothetical protein
gcgtcgataccaaaggtcaggtatttggtcttgatgagaccgttgttacctctggccagc
tgattttgcagcattgtggtgtattcctcgcggatactgtcaaaggcgtccctctggggc
gggatggaaatggagttagcaaaggtctcctccgatgccgcaaggttcaaaaaagacagc
tggaaatgaatcgagctgtcaaaataattgaggaaatcacaccacccctcaaagattgcc
gtcttatcttcgttttgggagagctgatagttgatgtcctgaaactggatggtctttgtg
tagtggctgtccgatacgcggcagattccgtccggccacatccgttcataagggatactg
tcctgcgcagattttccttttttgtccgtgcggttagcgcgggcaatggccgcttcgatc
tgcttcttatcggcgcgggacagctttttctttgtctttaccggctgcacagttttttcc
tcggtttttccgaacatccgatgcagccatttttttattgcggtgaacaatgtcatacac
ctccttatcgagcatttcctgccgctttaatacggcataaaagttgttggtctggtaagg
tcgctgctttggacggatcacagctactttgagaatgttgcccacgatcttttccagggg
ctgtccatgcttttcgtacatagccagcataaagaagggcagcataaccagcatcataca
catagccgctacactgtttccggtaggttttctgagcaaaaagaaaagcggtacgccaat
aagcgctccgcccgtgaagcagataagctgccgcttggtcagattgaacatgacctttgt
tttgacttttgttaagtccttgggtacgggtacataagccaatgtggaaacctccttccg
ttttagtgcgcctgaaagactgatttggcgagacttccggttttgaacagcgtaaaacat
agcagtacggtgtagcccacgcagctccagattgccatgatgatgtcatcttccagagcg
atgttctgcaccagcacagcataaattgccacacagacgataatgagaaacgcctgaaag
cccagtgccagcagggatcggaggtaattctgtcccataccgccccattctt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.2444 Subdoligranulum variabile DSM 15176 FIG   hypothetical protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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