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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.3179: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: Tn5252, Orf23
Translate Function Assignments



Context on contig NZ_GG704769 from base 336380 to 347314 (10935 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3172 336380 336754 375 +           hypothetical protein  
3173 336789 337535 747 + 34         hypothetical protein  
3174 337549 337869 321 + 13         hypothetical protein  
3175 337882 338301 420 + 12         hypothetical protein  
3176 338388 338888 501 + 86 5     FIG00515953: hypothetical protein  
3177 338885 340714 1830 + -4         TrsK-like protein  
3178 340933 341151 219 + 218         Maff2 family protein # long form  
3179 341221 342090 870 + 69       Tn5252, Orf23  
3180 342492 342361 132 - 270         hypothetical protein  
3181 342457 344925 2469 + -36 4     TrsE-like protein  
3182 344922 345305 384 + -4         hypothetical protein  
3183 345598 347034 1437 + 292 4     NLP/P60 family protein  
3184 347063 347314 252 + 28         FIG01032253: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.3179 Tn5252, Orf23
MDFLLEALTNWLKEMLVGGIMSNLSGMFDSVNQQVADISVQVGQTPQGWNGSIFNMIENL
SNSIMVPIAGVILAIVMTVDLIQMIADKNNLHDVDTWMIFKWVFKSAAAILIVTNTWNIV
MGVFDMAQSVVAQAAGIINSDASIDISSVMTDLEPRLMEMDLGPLFGLWFQSLFIGITMW
ALYICIFIVIYGRMIEIYLVTSVAPVPMAAMMGKEWGGMGQNYLRSLLALGFQAFLIIVC
VAIYAVLVQNIALEDDIIMAIWSCVGYTVLLCFTLFKTGSLAKSVFQAH

MD5 = 3c9865cef9e728d575a14a0b7d519e95


  DNA Sequence

>fig|411471.5.peg.3179 Tn5252, Orf23
atggatttcttacttgaagccctgacaaattggctgaaagaaatgctggtgggcggtatt
atgagcaacctttcggggatgtttgacagcgtaaaccaacaggtcgcggatatatccgta
caggtaggacagaccccacagggatggaatggcagtattttcaatatgattgagaatctg
tcaaactccatcatggtgccgattgcaggtgtgatcctggctatcgtgatgaccgtagac
ctgatccagatgattgcagacaagaacaacctgcatgatgtggatacctggatgattttc
aagtgggtgttcaaatcagctgctgccatcctcattgtcacaaacacatggaatatcgtg
atgggcgtctttgatatggcgcagagcgtggtggcgcaggcggcagggattatcaattcg
gatgcgtccattgacatttcctcagttatgaccgatctggaaccgaggctgatggaaatg
gatttgggaccgctgttcggactgtggttccaatccctctttattggcattaccatgtgg
gcgttgtatatctgtatctttatcgttatttatggccgtatgatcgagatctaccttgta
acttcggtggctcccgttccaatggctgcaatgatgggtaaagaatggggcggtatggga
cagaattacctccgatccctgctggcactgggctttcaggcgtttctcattatcgtctgt
gtggcaatttatgctgtgctggtgcagaacatcgctctggaagatgacatcatcatggca
atctggagctgcgtgggctacaccgtactgctatgttttacgctgttcaaaaccggaagt
ctcgccaaatcagtctttcaggcgcactaa


  DNA with Flanking Sequence

>fig|411471.5.peg.3179 Tn5252, Orf23
tccgctgagaaaggagtgatcgtatctatttgccgcaactgcctctgttgaggccattgg
cgtacaaagcgggcaatcatcaacaaaataatgaaaaaggaggacagccggaatcatgcc
cccggaaaccgggcggtagattgttccggcttttgtatgcctatgaaacatgacaaacct
attttttaatcagattccggctaacaaactatatggcattttttgaacaggcaattaccg
ttcttcagactctcgttatcgctctgggcgctggtcttggtatctggggtgtcatcaacc
tgttggaaggttacggcaacgacaaccctggcgcaaaatctcagggcatgaagcagctca
tggccggcgctggtgtagccgtagtcggcatggtccttgtacctctgctctccggactgt
tctctgtctaagcgttcctgcatgaaatccttgccgctcccgcagctttgcgggggcggc
ggaaaggaggttgacaccgtatggatttcttacttgaagccctgacaaattggctgaaag
aaatgctggtgggcggtattatgagcaacctttcggggatgtttgacagcgtaaaccaac
aggtcgcggatatatccgtacaggtaggacagaccccacagggatggaatggcagtattt
tcaatatgattgagaatctgtcaaactccatcatggtgccgattgcaggtgtgatcctgg
ctatcgtgatgaccgtagacctgatccagatgattgcagacaagaacaacctgcatgatg
tggatacctggatgattttcaagtgggtgttcaaatcagctgctgccatcctcattgtca
caaacacatggaatatcgtgatgggcgtctttgatatggcgcagagcgtggtggcgcagg
cggcagggattatcaattcggatgcgtccattgacatttcctcagttatgaccgatctgg
aaccgaggctgatggaaatggatttgggaccgctgttcggactgtggttccaatccctct
ttattggcattaccatgtgggcgttgtatatctgtatctttatcgttatttatggccgta
tgatcgagatctaccttgtaacttcggtggctcccgttccaatggctgcaatgatgggta
aagaatggggcggtatgggacagaattacctccgatccctgctggcactgggctttcagg
cgtttctcattatcgtctgtgtggcaatttatgctgtgctggtgcagaacatcgctctgg
aagatgacatcatcatggcaatctggagctgcgtgggctacaccgtactgctatgtttta
cgctgttcaaaaccggaagtctcgccaaatcagtctttcaggcgcactaaaacggaagga
ggtttccacattggcttatgtacccgtacccaaggacttaacaaaagtcaaaacaaaggt
catgttcaatctgaccaagcggcagcttatctgcttcacgggcggagcgcttattggcgt
accgcttttctttttgctcagaaaacctaccggaaacagtgtagcggctatgtgtatgat
gctggttatgctgcccttctttatgctggctatgtacgaaaagcatggacagcccctgga
aaagatcgtgggcaacattctcaaagtagctgtgatccgtccaaagcagcgaccttacca
gaccaacaacttttatgccgtattaaagcggcaggaaatgctcgataaggaggtgtatga
cattgttcaccgcaataaaaaaatggctgcatcggatgttcggaaaaaccgaggaaaaaa
ctgtgcagccggtaaagacaaagaaaaagctgtcccgcgccgataagaagcagatcgaag
cggccattgc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.2443 Subdoligranulum variabile DSM 15176 FIG   Tn5252, Orf23
gb|EDP11845.1 Eubacterium dolichum DSM 3991     hypothetical protein EUBDOL_00402
gb|EEG44273.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02877
gi|158433556 Eubacterium dolichum DSM 3991 NCBI   hypothetical protein EUBDOL_00402
gi|160914398 Eubacterium dolichum DSM 3991 NCBI   hypothetical protein EUBDOL_00402
gi|225034027 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02877
gi|225566142 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02877
img|641394171 Eubacterium dolichum DSM 3991 IMG   hypothetical protein
ref|ZP_02076613.1 Eubacterium dolichum DSM 3991 RefSeq   hypothetical protein EUBDOL_00402
ref|ZP_03776332.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02877
tr|A8R8T4 Eubacterium dolichum DSM 3991 TrEMBL   Putative uncharacterized protein
tr|C0CF69 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
5 fig|411471.5.peg.3176 FIG00515953: hypothetical protein
4 fig|411471.5.peg.3181 TrsE-like protein
4 fig|411471.5.peg.3183 NLP/P60 family protein


  Attributes

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  Protein Families

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