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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.3173: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_GG704769 from base 331570 to 344925 (13356 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
3167 331570 331968 399 +       4: 3 6 5 4   SSU ribosomal protein S9p (S16e)  
3168 332463 332041 423 - 72         hypothetical protein  
3169 332447 333268 822 + -17     2: 1 2   Chromosome (plasmid) partitioning protein ParA  
3170 333225 334154 930 + -44     2: 1 2   Chromosome (plasmid) partitioning protein ParB  
rna.56 334723 334647 77 - 492         tRNA-Ile-GAT  
rna.57 334802 334727 76 - 3         tRNA-Ala-TGC  
3171 335462 335602 141 + 659         hypothetical protein  
3172 336380 336754 375 + 777         hypothetical protein  
3173 336789 337535 747 + 34         hypothetical protein  
3174 337549 337869 321 + 13         hypothetical protein  
3175 337882 338301 420 + 12         hypothetical protein  
3176 338388 338888 501 + 86         FIG00515953: hypothetical protein  
3177 338885 340714 1830 + -4         TrsK-like protein  
3178 340933 341151 219 + 218         Maff2 family protein # long form  
3179 341221 342090 870 + 69         Tn5252, Orf23  
3180 342492 342361 132 - 270         hypothetical protein  
3181 342457 344925 2469 + -36         TrsE-like protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.3173 hypothetical protein
MNQMEIFKNPEFGSIRVIEENGKYLFSGTDVAAALGYSNPRDAIIRHCRYVVKRDAPHPQ
SPDRKISMTFIPEGDLYRLIVHSKLPSAERFERWVFDEVLPTIRKHGAYLTKEKLWEVAT
SPEALMKLCSDLLAEREANISLRKENAQLEGKAAFYDLFIDLKHSTNLRTTAKELDVPER
RFVRFLIERRFVYRTASGNVLPYANVKNAGLFCVKDYCNHGHTGSYTLVTPQGKLYFAQL
REMILLVS

MD5 = 99e95d71d979e0041117a5fb8efc6d94


  DNA Sequence

>fig|411471.5.peg.3173 hypothetical protein
atgaaccagatggaaattttcaaaaacccggagtttggcagtatccgtgtcattgaggaa
aacggcaaatacttgttcagcggaacggatgtggctgctgcgctggggtacagtaatccc
cgcgatgcaattatccgccattgtaggtatgtcgtgaaacgcgacgcacctcacccacaa
agccccgaccgcaaaatcagtatgacttttatcccagaaggcgatttgtaccgcctaatc
gttcacagcaaattgccatcggcagaacggtttgaacggtgggtgttcgatgaggtcctg
cctaccattcgcaagcacggggcctatctcacgaaagagaagctgtgggaggttgccact
tccccggaagctctgatgaagctctgctcagacttgctggctgagcgtgaagcgaatatt
tctctgcgtaaggaaaatgcacagctggagggcaaagccgctttctatgacctgttcatc
gacttaaagcacagcaccaatctcaggactaccgccaaagagttggatgtcccagagcgc
cggtttgtccggtttctgatagaacggcggtttgtgtaccgcacggcatccggcaatgtg
ctgccttatgccaatgtgaaaaatgcaggactgttttgcgttaaagactactgcaaccac
ggtcataccggttcctacacgctggtcacgccccagggaaagctctactttgcccagctg
cgggagatgatcttgctggtctcataa


  DNA with Flanking Sequence

>fig|411471.5.peg.3173 hypothetical protein
aaaatcaattacttatggatcaagtaccgattccattcccttccgggaaacagcggcgga
aagaccgccggaacggaaaggaagggatgcgatgtctgtcacagagatagaaaattatcg
ggagttgattttggagaatatcgagtatgactgcatgaaacagcgttatcctctctacct
ggatgacctgaatgagatcgtagagctgttggtcgaaacggtctgtgccaaacgaaagac
cacccggatctctggggcagacttccctcacgagatcgtgcgttcccgttttttgaaact
ggacagctcccacatcgagtttgtcatggactgtctgcaaaagaataccacccaggtacg
caacatgaagcagtacctgcttgcggtgctgttcaatgcgcctaccaccatgaataacca
ctacacttcactggtcaatcacgatatgcacgcaggcggctggtaaaggccgccttttat
catgccaaaggaggcacgacatgaaccagatggaaattttcaaaaacccggagtttggca
gtatccgtgtcattgaggaaaacggcaaatacttgttcagcggaacggatgtggctgctg
cgctggggtacagtaatccccgcgatgcaattatccgccattgtaggtatgtcgtgaaac
gcgacgcacctcacccacaaagccccgaccgcaaaatcagtatgacttttatcccagaag
gcgatttgtaccgcctaatcgttcacagcaaattgccatcggcagaacggtttgaacggt
gggtgttcgatgaggtcctgcctaccattcgcaagcacggggcctatctcacgaaagaga
agctgtgggaggttgccacttccccggaagctctgatgaagctctgctcagacttgctgg
ctgagcgtgaagcgaatatttctctgcgtaaggaaaatgcacagctggagggcaaagccg
ctttctatgacctgttcatcgacttaaagcacagcaccaatctcaggactaccgccaaag
agttggatgtcccagagcgccggtttgtccggtttctgatagaacggcggtttgtgtacc
gcacggcatccggcaatgtgctgccttatgccaatgtgaaaaatgcaggactgttttgcg
ttaaagactactgcaaccacggtcataccggttcctacacgctggtcacgccccagggaa
agctctactttgcccagctgcgggagatgatcttgctggtctcataagaacggaaagaaa
gtgggttttatgcaggaaggcaaaacaatcggtcagctgatggaggaaatgcgccagaaa
gccggggcgcagaactatcacggccatgactacatggatctccagcggtttgcggagaac
acccggcacatgattatttttgatgtgctgacgcatgattccccggtgggctggaaagga
gaacgcacccgcctgtttttgtcagagataggctatgaaaaagctctggacagtcaggca
aaggggcagatcaagattctcagccatgcaaaggtcagaaatggagatttgttttatgac
cacaaagaacagatacgataggaggaatccgatatgaatgaggaaaagaaagtagccttt
aagtgggaatatggggaagaaaccatatcgctgcaacttgggatgtatgcgaataatcag
cggctttatatcggcatgattacccatacagaagatggggaggaaccgtttgcagatatg
acggtga


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
fig|411471.5.peg.2437 Subdoligranulum variabile DSM 15176 FIG   hypothetical protein
gb|EEG44266.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02870
gi|225034020 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02870
gi|225566135 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02870
ref|ZP_03776325.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02870
tr|C0CF62 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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