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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|411471.5.peg.2551: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: DNA primase (EC 2.7.7.-)
Translate Function Assignments


Context on contig NZ_GG657715 from base 778910 to 796286 (17377 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2544 779029 778910 120 -           hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 3   DNA topoisomerase III (EC 5.99.1.2)  
2550 783580 783861 282 + -4         hypothetical protein  
2551 783864 786995 3132 + 2     4: 5 2 4 1   DNA primase (EC 2.7.7.-)  
2552 788063 787038 1026 - 42         hypothetical protein  
2553 788062 788418 357 + -2         FIG00532870: hypothetical protein  
2554 788574 796286 7713 + 155         FIG00518980: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
COG0327 Harrison_Katherine_user DNA primase (EC 2.7.7.-)
COG0327_DUF34 vcrecy DNA primase (EC 2.7.7.-)
t6A_DNA_ghutinet Hutinet_Geoffrey_user DNA primase (EC 2.7.7.-)
AGORA_phylogenetic_markers Ravcheev_Dmitry_user DNA primase (EC 2.7.7.-)


  Protein Sequence

>fig|411471.5.peg.2551 DNA primase (EC 2.7.7.-)
MGESVFEVVKQSVTVREAAELYGIAVGRSGMACCPFHDDRHPSMKVDARFHCFGCGADGD
VIDFTARLYDLSPKEAAEKLAQDFGLSYDNKAPPRRSYVRQKSEAQVRKEKREHGWRVLT
DYYHLLRKWEADYSPKMPDEDPHPRFLEAIQKKDYMGYLLDTFLDSSTEEQDQWIAEHTA
EISAIEGRVNIMADKPTNRERLQQITAGIEQGIKELFESEKYMRYLSVMSRFHRYSVNNT
MLIYMQKPDATLVAGYNKWKNQFERHVKRGEHGITIIAPTPFKKKIEEQKLDPDTKAPIL
DAEGKAVMEEREVEIPMFRPVKVFDVSQTDGKPLPELASTLSGNVQNYEAFMEALRRSAP
VPLSVEPMAANMDGYFSPDRQRIAIRAGMSEVQTVSAAVHEIAHSKLHNYAKAQEEAVRA
GDKEPPKKKDRNTEEVEAESISYAVCQYYGIQTGENSFGYIANWSQGKELPELRASLETI
NKTAGELINDIDRHYKVICKERGIDLTAAPEPQLDPIEQLAADIDQFSFDYDTYEYRDQV
DNREDALRELTATLRSGDASGVRDWLQEFADENEPGEAVTKAAELLDRLDQLVPEPDPNL
VKMADEARAMGVDTAWNSDKEFPVSFDTERTQPSAEAQEALLLVDDATYLHVQSCDTGWD
YTLYDAATMKQLDGGQLDAPELSLSTAALKICEMRGMGGQSIRYAPLSMIETLQEAAIQQ
MQAAAQAAVPEVTQLPDAPEQALDEYPMPDPALTQDDLEKCGYLDSDLLPLSKERAYELM
AQDLTVYMVQQGENPAMAFDTADLDAHDGIFAVTREEWEDSPSFDAQVMDRMDHQQEREQ
AFLNHKGDCYAIYQVKHTDELRDIRYEGLEWVKSIGRTVQRDNYDLVYTAPLTPGDLKGS
VLDNLEYRFNNEHPADYRHPSMSVSDIVAIKQDGKVSCHYCDSFGFQQIPGFLPDNPLKS
AEMTVEDDYGMIDGVINNGTKEPTVAQLEQQARSGQPISLMDLAAAAHREDRDKKKSVMD
QLKSQPKSEHKKTAPKKSAEREI

MD5 = 901eb73a3d51c9f38126b2ffefc9bba2


  DNA Sequence

>fig|411471.5.peg.2551 DNA primase (EC 2.7.7.-)
atgggcgagagcgtatttgaagtcgtaaaacagtccgtcaccgtccgggaagcggcggag
ctttacggcatcgcggtggggcgcagcggcatggcctgttgccccttccacgatgaccgc
caccccagcatgaaggtggacgcccgtttccactgttttggctgcggcgcagacggcgac
gtgatcgacttcaccgcccggctctatgacctgtcccccaaggaggccgccgaaaagctg
gcccaggattttggcctttcctatgacaacaaggccccgccccggcgaagctatgtccgg
caaaaatccgaggcgcaggtacggaaagaaaaacgggaacacggctggcgcgtcctgacg
gactactaccacctgctccgaaaatgggaggccgactattcccccaagatgccggacgag
gacccgcacccgcgctttttggaggccatccagaaaaaagactacatgggctatctgctg
gacacctttctcgacagcagcaccgaggaacaggaccagtggatcgcagaacacaccgct
gaaatttcggccatagaagggagagtgaacatcatggctgacaaacccaccaaccgggaa
cggttgcagcaaatcacggcgggcatcgagcagggtatcaaggaactgttcgagagcgaa
aagtatatgcgctacctgtccgtgatgtcccggttccaccgctactccgtcaacaacacc
atgctcatctatatgcagaagccggacgccacgctggtggccgggtacaacaagtggaaa
aatcagtttgagcgtcatgtgaagcgcggcgaacacggcattaccatcattgcgcccacg
ccattcaagaaaaagattgaggaacagaagctggacccggacaccaaggcccccatcctg
gacgcagagggcaaggcggtcatggaggaacgggaagttgagatccccatgttccgcccg
gtgaaggtgttcgatgtaagccagacggacggcaaacccctgccggagctggcgtccacc
ctgtccgggaacgtccagaactacgaggctttcatggaggcgctgcgccggtccgcgccg
gtgccgctctctgtggagccgatggcagccaacatggacggatatttctcgccggaccgg
cagcgcatcgccatccgtgctggcatgagcgaggtacagaccgtttccgccgccgtccat
gagatcgcccacagcaagctgcacaactacgctaaggctcaggaggaagcggtcagggcc
ggtgacaaggagccgcccaagaagaaagaccgcaataccgaggaggtggaagccgagagc
atttcctacgcggtttgccagtattacggtatccagaccggcgagaacagcttcggctac
atcgccaactggagccagggtaaggagctgccggagctgcgggccagtttggaaactatc
aataagaccgccggtgagctgattaacgacatcgaccggcactataaggttatctgcaag
gagcgcggtattgacctgactgctgccccggaaccgcagctggaccctatcgagcagctg
gcagccgacatcgaccagttttcttttgactacgatacctatgaatatcgggatcaggtg
gataatcgtgaggatgcgctgcgggaactgaccgctacgctccgcagcggggatgccagc
ggtgttcgggactggctccaggaatttgccgatgaaaatgaacctggagaagcggtcaca
aaagctgccgagctgttggatcgtctggaccagctggtgccggaacctgaccccaacctt
gtgaaaatggcggatgaagcgagggcgatgggcgtagatactgcgtggaactctgataag
gaattcccggtatccttcgatactgaaaggacccagcccagcgccgaagcccaggaggcc
ctgttgctggttgatgatgccacttatcttcatgttcagtcctgcgacaccggctgggac
tacacgctctacgatgcagcgaccatgaagcagctggacggcggccagctggatgcgccg
gagctgtcgctgtccaccgctgcgctgaaaatctgtgagatgcgcggcatgggcggccag
tccattcgctatgcaccgctgtccatgatcgagaccttgcaggaggcggcaatccaacag
atgcaggcagcggctcaagccgctgtgccggaagtcacccagctgccggatgccccggag
caggcgctggacgaataccccatgccggacccggcgctgacccaagacgatttggaaaag
tgcggctacctggacagcgaccttctgcccctttccaaagagcgggcctacgagctgatg
gcgcaggacctgactgtgtacatggtccagcagggagagaatccggcgatggcctttgat
accgccgacctggacgcccacgatggcatttttgccgtcacccgtgaggaatgggaggat
agtccctcctttgatgctcaggtcatggaccgcatggaccaccagcaggaacgggagcag
gcgtttctcaaccacaagggcgattgctatgccatctatcaggtaaagcacaccgatgaa
ctgagggacattcgctatgaagggctggaatgggtcaagtccatcgggcggactgtgcag
cgcgataactacgatctggtctatactgcgccgctcacacccggcgacctgaaaggcagc
gtgctggataatcttgaataccgcttcaacaacgaacaccctgccgactaccgccacccg
tctatgagcgtcagtgacatcgttgccatcaagcaggacggcaaggtatcctgtcattac
tgcgacagttttggctttcagcaaatccccggcttcctgccggacaatccgctgaaaagt
gcggagatgacggtggaggacgactacggcatgatcgacggcgttatcaacaacggcacc
aaggagccgacggtggcccagctggaacagcaggcccgcagcggccagcccatctctctc
atggatttggcggccgccgcccaccgggaagatcgggacaagaagaagtccgtcatggat
cagctgaaaagtcagcctaaatccgaacacaaaaagacagcgcccaaaaagagcgcggaa
agggagatctga


  DNA with Flanking Sequence

>fig|411471.5.peg.2551 DNA primase (EC 2.7.7.-)
atttgcaatctggaagaacagcaagtggtgggccgcgaagcgtaaacagcccaccaaggc
catcgtggcggcgcttttgaaggatggccgcgctcgcgtgaccggcctgtattccgagaa
aagcggcaagacctacgacgccaccgtggtgctggaggataccggccagtacgtcaactt
caagctggactttgaccggcagaaaggcggcggcaaatgaaactgagtttgtatgaacag
gaaacgattatcctctataaccaggccgaggccaccgccgaggtctattcccacgacccg
cgcctgctggaaaagctgcggcggctggcggagaaatacccggaccagatcgtgaaaaag
gaccgccagaccttcgtggtgcccaaacgctgcgtgtcggtgcgggagccgtacagcgcc
gagcgccgcaaggccgccagcgaacgggccaaggctgccgggtacaggccgcccatcccc
aaagcgggcggtaagtgagcatgggcgagagcgtatttgaagtcgtaaaacagtccgtca
ccgtccgggaagcggcggagctttacggcatcgcggtggggcgcagcggcatggcctgtt
gccccttccacgatgaccgccaccccagcatgaaggtggacgcccgtttccactgttttg
gctgcggcgcagacggcgacgtgatcgacttcaccgcccggctctatgacctgtccccca
aggaggccgccgaaaagctggcccaggattttggcctttcctatgacaacaaggccccgc
cccggcgaagctatgtccggcaaaaatccgaggcgcaggtacggaaagaaaaacgggaac
acggctggcgcgtcctgacggactactaccacctgctccgaaaatgggaggccgactatt
cccccaagatgccggacgaggacccgcacccgcgctttttggaggccatccagaaaaaag
actacatgggctatctgctggacacctttctcgacagcagcaccgaggaacaggaccagt
ggatcgcagaacacaccgctgaaatttcggccatagaagggagagtgaacatcatggctg
acaaacccaccaaccgggaacggttgcagcaaatcacggcgggcatcgagcagggtatca
aggaactgttcgagagcgaaaagtatatgcgctacctgtccgtgatgtcccggttccacc
gctactccgtcaacaacaccatgctcatctatatgcagaagccggacgccacgctggtgg
ccgggtacaacaagtggaaaaatcagtttgagcgtcatgtgaagcgcggcgaacacggca
ttaccatcattgcgcccacgccattcaagaaaaagattgaggaacagaagctggacccgg
acaccaaggcccccatcctggacgcagagggcaaggcggtcatggaggaacgggaagttg
agatccccatgttccgcccggtgaaggtgttcgatgtaagccagacggacggcaaacccc
tgccggagctggcgtccaccctgtccgggaacgtccagaactacgaggctttcatggagg
cgctgcgccggtccgcgccggtgccgctctctgtggagccgatggcagccaacatggacg
gatatttctcgccggaccggcagcgcatcgccatccgtgctggcatgagcgaggtacaga
ccgtttccgccgccgtccatgagatcgcccacagcaagctgcacaactacgctaaggctc
aggaggaagcggtcagggccggtgacaaggagccgcccaagaagaaagaccgcaataccg
aggaggtggaagccgagagcatttcctacgcggtttgccagtattacggtatccagaccg
gcgagaacagcttcggctacatcgccaactggagccagggtaaggagctgccggagctgc
gggccagtttggaaactatcaataagaccgccggtgagctgattaacgacatcgaccggc
actataaggttatctgcaaggagcgcggtattgacctgactgctgccccggaaccgcagc
tggaccctatcgagcagctggcagccgacatcgaccagttttcttttgactacgatacct
atgaatatcgggatcaggtggataatcgtgaggatgcgctgcgggaactgaccgctacgc
tccgcagcggggatgccagcggtgttcgggactggctccaggaatttgccgatgaaaatg
aacctggagaagcggtcacaaaagctgccgagctgttggatcgtctggaccagctggtgc
cggaacctgaccccaaccttgtgaaaatggcggatgaagcgagggcgatgggcgtagata
ctgcgtggaactctgataaggaattcccggtatccttcgatactgaaaggacccagccca
gcgccgaagcccaggaggccctgttgctggttgatgatgccacttatcttcatgttcagt
cctgcgacaccggctgggactacacgctctacgatgcagcgaccatgaagcagctggacg
gcggccagctggatgcgccggagctgtcgctgtccaccgctgcgctgaaaatctgtgaga
tgcgcggcatgggcggccagtccattcgctatgcaccgctgtccatgatcgagaccttgc
aggaggcggcaatccaacagatgcaggcagcggctcaagccgctgtgccggaagtcaccc
agctgccggatgccccggagcaggcgctggacgaataccccatgccggacccggcgctga
cccaagacgatttggaaaagtgcggctacctggacagcgaccttctgcccctttccaaag
agcgggcctacgagctgatggcgcaggacctgactgtgtacatggtccagcagggagaga
atccggcgatggcctttgataccgccgacctggacgcccacgatggcatttttgccgtca
cccgtgaggaatgggaggatagtccctcctttgatgctcaggtcatggaccgcatggacc
accagcaggaacgggagcaggcgtttctcaaccacaagggcgattgctatgccatctatc
aggtaaagcacaccgatgaactgagggacattcgctatgaagggctggaatgggtcaagt
ccatcgggcggactgtgcagcgcgataactacgatctggtctatactgcgccgctcacac
ccggcgacctgaaaggcagcgtgctggataatcttgaataccgcttcaacaacgaacacc
ctgccgactaccgccacccgtctatgagcgtcagtgacatcgttgccatcaagcaggacg
gcaaggtatcctgtcattactgcgacagttttggctttcagcaaatccccggcttcctgc
cggacaatccgctgaaaagtgcggagatgacggtggaggacgactacggcatgatcgacg
gcgttatcaacaacggcaccaaggagccgacggtggcccagctggaacagcaggcccgca
gcggccagcccatctctctcatggatttggcggccgccgcccaccgggaagatcgggaca
agaagaagtccgtcatggatcagctgaaaagtcagcctaaatccgaacacaaaaagacag
cgcccaaaaagagcgcggaaagggagatctgatatgaacgctatgacctttgaggaaacc
aatttgctgtgtatctacaaccccggcagtcgcctgggagccatcgaggcgttgtccgag
atgcgtggccatctggagccggacgagaccgaactgctggccctgaccgacagcaccctc
gccaagctgcgtgccatgactgacgtcgagtttgacgagctggaactgtacccggatttt
gacgagtaacaccctgttttgaccagccggggcggccaccgtgccgccccttttcgattc
ctgaatggaagggaggacagataaccatgccaaccaaagcagaaatgtacgcgcagatgg
cggagaaggtcgcggtccagctcaccggcagttggcaggagtgggcgggctttctcacca
acgctgcccgactctacaagtatccattccatgagcagctgatgatctacgctcagcgcc
cggacgctaccgcctgcgccgagtacgacctgtggaatgaccgcatgggccg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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