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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|411471.5.peg.2549: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: DNA topoisomerase III (EC 5.99.1.2)
Translate Function Assignments


Context on contig NZ_GG657715 from base 774468 to 796286 (21819 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2541 774468 776741 2274 +           TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 4   DNA topoisomerase III (EC 5.99.1.2)  
2550 783580 783861 282 + -4         hypothetical protein  
2551 783864 786995 3132 + 2     4: 1 3 5 2   DNA primase (EC 2.7.7.-)  
2552 788063 787038 1026 - 42         hypothetical protein  
2553 788062 788418 357 + -2         FIG00532870: hypothetical protein  
2554 788574 796286 7713 + 155         FIG00518980: hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
DNA_processing_cluster VeronikaV DNA topoisomerase III (EC 5.99.1.2)


  Protein Sequence

>fig|411471.5.peg.2549 DNA topoisomerase III (EC 5.99.1.2)
MIAEKPSVAKSLATVLGAATRKDGYLEGNGWLVSWCLGHLAGLADAATYNPDYAKWRYDD
LPILPETWRFTIAKDKRDQFDVLRTLLRREDVTEVVNACDAGREGELIFRTVYCLAGCQK
PMKRLWISSMEDSAIREGFAHLRPGADYDGLHQAALCRAKADWLVGINATRLFSVLYHRT
LNIGRVMSPTLALIVQREAEIDAFKPVPFYTVALDLPGFTAASARMDKKADAEQLKNACQ
SGTVTVKQVARRDKSEKPPALYDLTTLQRDANRLLGFTAQQTLDYLQNLYEKKLCTYPRT
DSRYLTSDMAESLPVLVNLVANAMPFRKGIAISCDTAAVINDKKVTDHHAVIPTRNIREA
DLSALPVGERAILELVALRLLCAVAQPYTFAETAVVVECDGAEFTAKGRTVKQPGWRALD
AAYRASMKSAPEQDGNSEDKALPELAEGQELPVAGAAVKEGKTTPPKHFTEDTLLSAMET
AGKDDMPEDAERKGLGTPATRAGILEKLVSTGFLERKKSKKTVQLMPSHDAISLITVLPE
QLQSPLLTAEWEYRLGKIERGELAPEDFMAEITAMLKELVGTYQVIKGSEYLFTPPREVV
GRCPRCGGEIAEMQKGFFCQDKSCKFAIWKNSKWWAAKRKQPTKAIVAALLKDGRARVTG
LYSEKSGKTYDATVVLEDTGQYVNFKLDFDRQKGGGK

MD5 = 92d0a9f3ce92ef1399b38322688db800


  DNA Sequence

>fig|411471.5.peg.2549 DNA topoisomerase III (EC 5.99.1.2)
gtgatcgctgagaagccctcggtggcaaaatccctggccaccgtgctgggcgctgccacc
cgcaaagatggctacctggagggcaacggttggctggtgagctggtgcctggggcacctg
gccgggctggcagatgccgccacttacaaccccgactatgccaagtggcgctatgatgac
ctgccgattctgccggaaacctggcgttttaccatcgccaaggacaaacgggatcagttt
gacgtgctgcgtaccctgctgcggcgggaggacgtgaccgaggtagtcaacgcctgcgac
gccgggcgcgagggcgagctgatcttccgcacggtctactgcctggcgggctgccagaag
cccatgaaacggctgtggatcagcagcatggaggattccgccatccgggagggctttgca
cacctgcgccccggcgcggactatgacggactgcatcaggcggccctctgccgtgccaaa
gcggactggctggtgggtatcaacgccacccggctgttttcggtactgtaccaccgcact
ctcaacattgggcgggtcatgtccccgacgctggccctcatcgttcagcgggaggcagag
atcgacgccttcaagccggtgccgttttatacggtggcgctggacctgcccggttttacc
gctgccagcgcccgcatggacaagaaagccgatgccgaacagctgaaaaacgcctgccaa
agcggcacggtgacggtcaaacaggtggcgcgcagggacaaatccgagaagccgcccgcc
ctctatgacctcaccaccctccaacgggacgccaaccgcctgttaggcttcacggcgcag
cagacgctggactatctgcaaaacctctatgaaaagaagctatgcacctatccccggacg
gacagccgatacctgacctcggatatggctgaaagcctgccggtgctggtgaatttggtc
gccaacgccatgccgttccgcaaaggcatcgccatttcctgcgatacagcggcggtcatc
aacgacaagaaagtgaccgaccaccatgcggtaatccctacacgcaacatccgggaggcg
gacctgtctgctttgccagtgggggaacgggcgattttggagctggtggccctgcggctg
ctgtgtgcggtggcccagccctatacctttgcggaaactgccgttgttgtggagtgcgat
ggcgcggagttcaccgccaaagggcgcacggtgaagcagcccggctggcgggcgctggac
gctgcctatcgggccagcatgaaaagtgcgccggaacaggacggcaattccgaagataag
gcgttgccggaactggccgaaggccaggaactgccggtcgccggtgccgccgttaaggag
ggcaagactaccccgcccaaacacttcaccgaggacacactgctctccgcgatggaaact
gccgggaaagacgatatgccggaggatgccgagcgcaaagggctggggacgcctgccacc
cgtgccgggattttggaaaagctggtgtccaccggctttctggaacgcaaaaagagtaag
aaaaccgtacagctcatgccctcccacgatgccatttccctgattaccgtcctgccggag
cagcttcaatccccgctgctgaccgccgagtgggagtaccggctgggcaagatcgagcgc
ggcgagctggccccggaggactttatggccgagatcaccgccatgctgaaggagctggtg
gggacctatcaggtcatcaagggcagcgagtacctgttcaccccgccccgtgaggtagtg
ggcagatgcccccgctgcggcggcgaaattgcagaaatgcaaaaaggcttcttctgccag
gacaaatcttgcaaatttgcaatctggaagaacagcaagtggtgggccgcgaagcgtaaa
cagcccaccaaggccatcgtggcggcgcttttgaaggatggccgcgctcgcgtgaccggc
ctgtattccgagaaaagcggcaagacctacgacgccaccgtggtgctggaggataccggc
cagtacgtcaacttcaagctggactttgaccggcagaaaggcggcggcaaatga


  DNA with Flanking Sequence

>fig|411471.5.peg.2549 DNA topoisomerase III (EC 5.99.1.2)
catccgccacttgttccgcggcgaggtccacgattttgtccgaaacaaacttctgccctg
cgggcaggagacgctttccaccttgaccgagccggagcagacggcggcgcggttcctgtt
ctgcgccctgatcggctatctcaaagaggaagccccgatggatgagcagagcttcccgat
ggtgatggagatgctgaactacgccgagggtgcgaaagaggacggcgacaaggacgtgat
cgacattctgatggaggaaaccgccgcccggacccgccagcgcgaggaatatttcagcga
ttaccgccgctaccagctcatgcaggtagataaggagcgggtgctgctggcctgccgggt
catcatcaacgacctgctgggaaagctgtaccgctatgattacaacgtcggttatgactg
ccttctggacgatggcaacagcgtttccagaaaactgaaaaaatccaacgaagaaatgga
ggttgaggaagatgcgccttgtgatcgctgagaagccctcggtggcaaaatccctggcca
ccgtgctgggcgctgccacccgcaaagatggctacctggagggcaacggttggctggtga
gctggtgcctggggcacctggccgggctggcagatgccgccacttacaaccccgactatg
ccaagtggcgctatgatgacctgccgattctgccggaaacctggcgttttaccatcgcca
aggacaaacgggatcagtttgacgtgctgcgtaccctgctgcggcgggaggacgtgaccg
aggtagtcaacgcctgcgacgccgggcgcgagggcgagctgatcttccgcacggtctact
gcctggcgggctgccagaagcccatgaaacggctgtggatcagcagcatggaggattccg
ccatccgggagggctttgcacacctgcgccccggcgcggactatgacggactgcatcagg
cggccctctgccgtgccaaagcggactggctggtgggtatcaacgccacccggctgtttt
cggtactgtaccaccgcactctcaacattgggcgggtcatgtccccgacgctggccctca
tcgttcagcgggaggcagagatcgacgccttcaagccggtgccgttttatacggtggcgc
tggacctgcccggttttaccgctgccagcgcccgcatggacaagaaagccgatgccgaac
agctgaaaaacgcctgccaaagcggcacggtgacggtcaaacaggtggcgcgcagggaca
aatccgagaagccgcccgccctctatgacctcaccaccctccaacgggacgccaaccgcc
tgttaggcttcacggcgcagcagacgctggactatctgcaaaacctctatgaaaagaagc
tatgcacctatccccggacggacagccgatacctgacctcggatatggctgaaagcctgc
cggtgctggtgaatttggtcgccaacgccatgccgttccgcaaaggcatcgccatttcct
gcgatacagcggcggtcatcaacgacaagaaagtgaccgaccaccatgcggtaatcccta
cacgcaacatccgggaggcggacctgtctgctttgccagtgggggaacgggcgattttgg
agctggtggccctgcggctgctgtgtgcggtggcccagccctatacctttgcggaaactg
ccgttgttgtggagtgcgatggcgcggagttcaccgccaaagggcgcacggtgaagcagc
ccggctggcgggcgctggacgctgcctatcgggccagcatgaaaagtgcgccggaacagg
acggcaattccgaagataaggcgttgccggaactggccgaaggccaggaactgccggtcg
ccggtgccgccgttaaggagggcaagactaccccgcccaaacacttcaccgaggacacac
tgctctccgcgatggaaactgccgggaaagacgatatgccggaggatgccgagcgcaaag
ggctggggacgcctgccacccgtgccgggattttggaaaagctggtgtccaccggctttc
tggaacgcaaaaagagtaagaaaaccgtacagctcatgccctcccacgatgccatttccc
tgattaccgtcctgccggagcagcttcaatccccgctgctgaccgccgagtgggagtacc
ggctgggcaagatcgagcgcggcgagctggccccggaggactttatggccgagatcaccg
ccatgctgaaggagctggtggggacctatcaggtcatcaagggcagcgagtacctgttca
ccccgccccgtgaggtagtgggcagatgcccccgctgcggcggcgaaattgcagaaatgc
aaaaaggcttcttctgccaggacaaatcttgcaaatttgcaatctggaagaacagcaagt
ggtgggccgcgaagcgtaaacagcccaccaaggccatcgtggcggcgcttttgaaggatg
gccgcgctcgcgtgaccggcctgtattccgagaaaagcggcaagacctacgacgccaccg
tggtgctggaggataccggccagtacgtcaacttcaagctggactttgaccggcagaaag
gcggcggcaaatgaaactgagtttgtatgaacaggaaacgattatcctctataaccaggc
cgaggccaccgccgaggtctattcccacgacccgcgcctgctggaaaagctgcggcggct
ggcggagaaatacccggaccagatcgtgaaaaaggaccgccagaccttcgtggtgcccaa
acgctgcgtgtcggtgcgggagccgtacagcgccgagcgccgcaaggccgccagcgaacg
ggccaaggctgccgggtacaggccgcccatccccaaagcgggcggtaagtgagcatgggc
gagagcgtatttgaagtcgtaaaacagtccgtcaccgtccgggaagcggcggagctttac
ggcatcgcggtggggcgcagcggcatggcctgttgccccttccacgatgaccgccacccc
agcatgaaggtggacgcccgtttccactgttttggctgcggcgcagacggcgacgtgatc
gacttcaccgcccggctctatgacctgtccccca


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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Link Explains Key		 Value


  Protein Families

No protein families found

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