The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|411471.5.peg.2545: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG657715 from base 773948 to 786995 (13048 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2540 773948 774364 417 +           FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 4   DNA topoisomerase III (EC 5.99.1.2)  
2550 783580 783861 282 + -4         hypothetical protein  
2551 783864 786995 3132 + 2     4: 1 3 5 2   DNA primase (EC 2.7.7.-)  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2545 hypothetical protein
MPPITVVEKMDRSGNRLTLETECLRSCTLPSIAYGFKRCSQKHKIGPQEKFCNHHPLCRA
VWQAGGRVTRFIGYDAGERKRYEHSRKFNEADKKYENRYPLIEDWHWTRDDCIRAIQEAG
LPLPGKSSCFFCPSMKRKEIETLKRQYPDLYRRALAIEENAMPHLKTVKGLGRNYAWKER
YGME

MD5 = e66495d2b0a77866091707f0c6f44ebf


  DNA Sequence

>fig|411471.5.peg.2545 hypothetical protein
atgccgcccatcacggtggtggagaagatggaccgcagcggcaaccgcctgactttggaa
accgagtgcctgcgttcatgtacgctgccctccatcgcctacggcttcaagcggtgttca
cagaagcacaagatcggaccgcaggagaaattctgcaaccatcacccgctgtgccgcgcc
gtgtggcaggcaggtggacgggtcacgcggtttatcggctacgatgccggggagcggaaa
cggtatgaacattccagaaaattcaatgaggcggacaaaaaatatgagaaccgctacccg
ctgatcgaggattggcactggacgcgagacgattgtattcgggcgatccaggaggcgggg
ctgcctctgcccggcaaatcgtcctgctttttctgccccagtatgaagcgcaaggaaatc
gaaaccctgaaacggcaataccccgacctgtaccggcgggcgcttgccattgaagaaaat
gcaatgccccatctcaagaccgtcaaggggttggggcgcaactacgcttggaaagagcga
tatggaatggagtga


  DNA with Flanking Sequence

>fig|411471.5.peg.2545 hypothetical protein
tgcttcgtgtcctggtgctacggccagatgggcctttccgagccgcgcttttcggcctgc
caggcccagggcatcccctggttccagtcgcatggacaatggggcgggcgggattacgcc
aacatcgcccccggcgatgccatcttctttgactgggatttggacggccgggccgaccat
gtggggatcgtggtgggcaccgacggcagcaaagtctacactgtggagggcaattccggc
gacgcctgcaagatcaagagctactcgctgacttatgagtgcatcaagggctacggcctg
atgaactggtgatttttgcggaggtataaaaactgaatattgtatcctttgggggcggca
cgaacagtgccgctcttttagttgggcttcaccggcacgggattcccgttgacctcatca
cctttgcggacaccggggcggagcagccccacacctatcagttccttgaaaccatgaacc
aatggctgcgggaacatgggatgccgcccatcacggtggtggagaagatggaccgcagcg
gcaaccgcctgactttggaaaccgagtgcctgcgttcatgtacgctgccctccatcgcct
acggcttcaagcggtgttcacagaagcacaagatcggaccgcaggagaaattctgcaacc
atcacccgctgtgccgcgccgtgtggcaggcaggtggacgggtcacgcggtttatcggct
acgatgccggggagcggaaacggtatgaacattccagaaaattcaatgaggcggacaaaa
aatatgagaaccgctacccgctgatcgaggattggcactggacgcgagacgattgtattc
gggcgatccaggaggcggggctgcctctgcccggcaaatcgtcctgctttttctgcccca
gtatgaagcgcaaggaaatcgaaaccctgaaacggcaataccccgacctgtaccggcggg
cgcttgccattgaagaaaatgcaatgccccatctcaagaccgtcaaggggttggggcgca
actacgcttggaaagagcgatatggaatggagtgattgactatggctaagaacaaaatcg
agcgcatcgaccaggagatcgccaaaactcgcgagaagatcgcggaacagcaggaaaagc
tgaaggccctggaagcgcagaaaaccgaggcggagaacctggaaatcgttcagatggtgc
gcgctgtgcgcatgaccccggcccagctgaacgccctgctgtcgggcggcatggtgcccg
gccaggcggcgcttcccgccgatcccgaacaggaggacatgacccatgaagaataagaag
attttcagaacctttgccgccctttgcatctgcctgatgctgatgggcggtttctctgtg
actgcctttgcccagggcgctgaccctgcgcccacggccacaccggctgcggacgccacc
aacgacagcaatgtggtggtggaagaaaccgaggataccccgccgctgaccccggaaggc
aacgccgccctggtggatgactacggcggcaacaagcagctcatcaccgtcacca


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search