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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


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Protein fig|411471.5.peg.2543: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: NLP/P60 family protein
Translate Function Assignments


Context on contig NZ_GG657715 from base 770723 to 783861 (13139 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2537 770723 772552 1830 +           TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 1   DNA topoisomerase III (EC 5.99.1.2)  
2550 783580 783861 282 + -4         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2543 NLP/P60 family protein
MIKEPRLRFTEEERADPALEKPIRKAEKAAVKADKAQAKIPKKQVKRAEVDPKTGKVTTK
LVLEDKPRPPSKLSHTVRDAPGNAVAGKLHQEIRKTEDGNVGVESAHKSEEAVETGVHLA
REGYRSHKLKPYRKAAQAERKLEKANIEALFQKSVYENPAAASNPLSRWQQKQQIKKQYA
AAKRAAQSGGSAAGAAQKTGKAAKTVKEKAQQAGAYVMRHKKGFGIALGLFLIVCLLLNT
MSSCSMMAQSIGSMISGTTYPSDDPELVAVEANYAAKEAALQAEIDNIESSHPGYDEYRY
DLDMIGHDPHELAAYLSAVLQGYTRASAQAELERIFAAQYQLTLTEEVEVRYRTETRTDS
EGNEYDVEVPYNYYILNVTLTSKPISSVALELLTPDQLEMYQVYRQTLGNKPLIFGGGSA
DTSDSESLAGVEFVNGTRPGNQEVVDIAKSQVGNVGGQPYWSWYGFNSRVEWCACFVSWC
YGQMGLSEPRFSACQAQGIPWFQSHGQWGGRDYANIAPGDAIFFDWDLDGRADHVGIVVG
TDGSKVYTVEGNSGDACKIKSYSLTYECIKGYGLMNW

MD5 = f7f433ec7757ee039f01f7a0f77d6e2a


  DNA Sequence

>fig|411471.5.peg.2543 NLP/P60 family protein
ttgattaaggaaccgcgcctgcgcttcacggaggaagaacgggcggacccggcgctggaa
aagcccatccgcaaggcggagaaggccgccgtcaaagcggacaaggcgcaggcaaaaatc
ccgaaaaagcaggtcaaacgggccgaggtggaccccaagaccggcaaggtcacgaccaag
ctggtgctggaggataagccccggccgccctccaaactgtcccatacagtgcgggacgcg
ccgggcaacgcagtggcgggcaagctccaccaggagatccgcaagaccgaggacggtaac
gtgggcgtggaaagcgcccacaagtctgaggaagccgtagagaccggcgtgcatctggcg
agggagggctaccgcagccacaaactgaaaccttaccgcaaggccgcccaggccgagcgg
aagctggaaaaggccaacatcgaggcgctgttccagaagtctgtctatgaaaaccctgcg
gcagccagcaacccgctgtcccgctggcagcagaaacagcagatcaagaagcagtacgcc
gccgccaaacgggccgcacagtccggcgggagcgccgccggtgccgcccaaaagaccggc
aaagcggccaagacggtcaaggagaaagcccagcaggccggggcctatgtgatgcgccat
aaaaagggctttggcatcgccctgggcctatttttaatcgtctgcttgctgctcaacacc
atgtcctcctgctccatgatggcgcagagcatcggttcgatgatctccggcaccacctac
ccatcggatgacccggagctggtggcggtggaggccaactacgccgccaaggaggccgcg
ctgcaagccgagatcgacaacatcgagagcagccaccccggctatgacgagtaccgctat
gacctggatatgatcggccacgacccccacgagctggcggcctacctgtccgctgtgctg
caaggctacacgcgggcaagcgcccaggcggagctggaacgcattttcgcggcccaatac
cagctgacgctgaccgaggaagtggaggtgcgctaccgcaccgagacccggacagacagc
gagggcaacgagtatgacgtggaagtgccctacaactactacatcttaaatgtgaccctc
accagcaagcccatctcctccgtggcgttggagctgctgacgccggatcagctggaaatg
taccaggtgtaccggcagacgctgggcaacaagcccctgatcttcggcggcgggtccgcc
gacaccagcgattccgagagtttggccggtgtggagtttgtgaacggcacccggcccggc
aatcaggaggtggtggacatcgctaaaagccaggtgggcaacgtgggcggccagccctat
tggagctggtacggttttaattcccgcgtggagtggtgcgcctgcttcgtgtcctggtgc
tacggccagatgggcctttccgagccgcgcttttcggcctgccaggcccagggcatcccc
tggttccagtcgcatggacaatggggcgggcgggattacgccaacatcgcccccggcgat
gccatcttctttgactgggatttggacggccgggccgaccatgtggggatcgtggtgggc
accgacggcagcaaagtctacactgtggagggcaattccggcgacgcctgcaagatcaag
agctactcgctgacttatgagtgcatcaagggctacggcctgatgaactggtga


  DNA with Flanking Sequence

>fig|411471.5.peg.2543 NLP/P60 family protein
gcgagggcgaggggctgctgttctacggctccaccatcctgccctttgtggaccacttcc
ccaagaataccgaactgtatcgcattatgacgaccaaaccccaggaaatgaaggaggctg
atggacgatgaaacccgaaattctgcataacgaccacatgatgtttctggaccgggcgct
ggaaacccagcgcaccgcgctcctgacggcgatggcggacgccgtttccgagtgccgcac
ggcggcggatcaggccgctgaactgaccgagaccggcgagaccggcctgctgcggctggt
ggagattctgtgcgccgccaaggtccagcgcgggcaggccggtgagactgtgctggaggg
caccgaggtccagattttggccgacgtagtggcccagctctacgcctgcctgaccgagtg
ccgcttcgtgggtccgctggggctggcggcctatgcggagctttccagcatggcggcctc
cctcatgctgggggaatggtttgattaaggaaccgcgcctgcgcttcacggaggaagaac
gggcggacccggcgctggaaaagcccatccgcaaggcggagaaggccgccgtcaaagcgg
acaaggcgcaggcaaaaatcccgaaaaagcaggtcaaacgggccgaggtggaccccaaga
ccggcaaggtcacgaccaagctggtgctggaggataagccccggccgccctccaaactgt
cccatacagtgcgggacgcgccgggcaacgcagtggcgggcaagctccaccaggagatcc
gcaagaccgaggacggtaacgtgggcgtggaaagcgcccacaagtctgaggaagccgtag
agaccggcgtgcatctggcgagggagggctaccgcagccacaaactgaaaccttaccgca
aggccgcccaggccgagcggaagctggaaaaggccaacatcgaggcgctgttccagaagt
ctgtctatgaaaaccctgcggcagccagcaacccgctgtcccgctggcagcagaaacagc
agatcaagaagcagtacgccgccgccaaacgggccgcacagtccggcgggagcgccgccg
gtgccgcccaaaagaccggcaaagcggccaagacggtcaaggagaaagcccagcaggccg
gggcctatgtgatgcgccataaaaagggctttggcatcgccctgggcctatttttaatcg
tctgcttgctgctcaacaccatgtcctcctgctccatgatggcgcagagcatcggttcga
tgatctccggcaccacctacccatcggatgacccggagctggtggcggtggaggccaact
acgccgccaaggaggccgcgctgcaagccgagatcgacaacatcgagagcagccaccccg
gctatgacgagtaccgctatgacctggatatgatcggccacgacccccacgagctggcgg
cctacctgtccgctgtgctgcaaggctacacgcgggcaagcgcccaggcggagctggaac
gcattttcgcggcccaataccagctgacgctgaccgaggaagtggaggtgcgctaccgca
ccgagacccggacagacagcgagggcaacgagtatgacgtggaagtgccctacaactact
acatcttaaatgtgaccctcaccagcaagcccatctcctccgtggcgttggagctgctga
cgccggatcagctggaaatgtaccaggtgtaccggcagacgctgggcaacaagcccctga
tcttcggcggcgggtccgccgacaccagcgattccgagagtttggccggtgtggagtttg
tgaacggcacccggcccggcaatcaggaggtggtggacatcgctaaaagccaggtgggca
acgtgggcggccagccctattggagctggtacggttttaattcccgcgtggagtggtgcg
cctgcttcgtgtcctggtgctacggccagatgggcctttccgagccgcgcttttcggcct
gccaggcccagggcatcccctggttccagtcgcatggacaatggggcgggcgggattacg
ccaacatcgcccccggcgatgccatcttctttgactgggatttggacggccgggccgacc
atgtggggatcgtggtgggcaccgacggcagcaaagtctacactgtggagggcaattccg
gcgacgcctgcaagatcaagagctactcgctgacttatgagtgcatcaagggctacggcc
tgatgaactggtgatttttgcggaggtataaaaactgaatattgtatcctttgggggcgg
cacgaacagtgccgctcttttagttgggcttcaccggcacgggattcccgttgacctcat
cacctttgcggacaccggggcggagcagccccacacctatcagttccttgaaaccatgaa
ccaatggctgcgggaacatgggatgccgcccatcacggtggtggagaagatggaccgcag
cggcaaccgcctgactttggaaaccgagtgcctgcgttcatgtacgctgccctccatcgc
ctacggcttcaagcggtgttcacagaagcacaagatcggaccgcaggagaaattctgcaa
ccatcacccgctgtgccgcgccgtgtggcaggcaggtggacgggtcacgcggtttatcgg
ctacgatgccggggagcggaaacggtatgaacattccagaaaattcaatgaggcggacaa
aaaatatgagaaccgctacccgctgatcgaggat


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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