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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2542: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG657715 from base 770723 to 783583 (12861 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2537 770723 772552 1830 +           TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 1   DNA topoisomerase III (EC 5.99.1.2)  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2542 hypothetical protein
MKPEILHNDHMMFLDRALETQRTALLTAMADAVSECRTAADQAAELTETGETGLLRLVEI
LCAAKVQRGQAGETVLEGTEVQILADVVAQLYACLTECRFVGPLGLAAYAELSSMAASLM
LGEWFD

MD5 = 5a3203b3479db0b1b493d6529d99577d


  DNA Sequence

>fig|411471.5.peg.2542 hypothetical protein
atgaaacccgaaattctgcataacgaccacatgatgtttctggaccgggcgctggaaacc
cagcgcaccgcgctcctgacggcgatggcggacgccgtttccgagtgccgcacggcggcg
gatcaggccgctgaactgaccgagaccggcgagaccggcctgctgcggctggtggagatt
ctgtgcgccgccaaggtccagcgcgggcaggccggtgagactgtgctggagggcaccgag
gtccagattttggccgacgtagtggcccagctctacgcctgcctgaccgagtgccgcttc
gtgggtccgctggggctggcggcctatgcggagctttccagcatggcggcctccctcatg
ctgggggaatggtttgattaa


  DNA with Flanking Sequence

>fig|411471.5.peg.2542 hypothetical protein
atcaaggagctgggcaagcagctgaaaaagatcgggatgctggtggtccaggaccaggtg
tggaaccgcgtcaccatcaaccgggccgcccgcaagtctacccgctactacatcgacgag
atgcacctgctcttgaaagaggaacagactgccgcctacacggtggagatttggaagcgg
ttccgaaagtggggcggcattcccacgggcatcacccagaacgtgaaggacctgctttct
tcccgcgaggtggagaacatctttgaaaactccgacttcgtgtatatgctcaaccaggcg
ggcggtgaccggcagattttggcccggcagctgggtatttccccgcaccagctgtcctat
gtgacccactccggcgagggcgaggggctgctgttctacggctccaccatcctgcccttt
gtggaccacttccccaagaataccgaactgtatcgcattatgacgaccaaaccccaggaa
atgaaggaggctgatggacgatgaaacccgaaattctgcataacgaccacatgatgtttc
tggaccgggcgctggaaacccagcgcaccgcgctcctgacggcgatggcggacgccgttt
ccgagtgccgcacggcggcggatcaggccgctgaactgaccgagaccggcgagaccggcc
tgctgcggctggtggagattctgtgcgccgccaaggtccagcgcgggcaggccggtgaga
ctgtgctggagggcaccgaggtccagattttggccgacgtagtggcccagctctacgcct
gcctgaccgagtgccgcttcgtgggtccgctggggctggcggcctatgcggagctttcca
gcatggcggcctccctcatgctgggggaatggtttgattaaggaaccgcgcctgcgcttc
acggaggaagaacgggcggacccggcgctggaaaagcccatccgcaaggcggagaaggcc
gccgtcaaagcggacaaggcgcaggcaaaaatcccgaaaaagcaggtcaaacgggccgag
gtggaccccaagaccggcaaggtcacgaccaagctggtgctggaggataagccccggccg
ccctccaaactgtcccatacagtgcgggacgcgccgggcaacgcagtggcgggcaagctc
caccaggagatccgcaagaccgaggacggtaacgtgggcgtggaaagcgcccacaagtct
gaggaagccgtagagaccggcgtgcatctggcgagggagggctaccgcagccacaaactg
aaaccttaccgcaaggccgcccaggccgagcggaagctggaaaaggccaacatcgaggcg
ctgttccagaagtctgtctatgaaaaccctgcggcagccagcaacccgctgtcccgctgg
c


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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