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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2541: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: TrsE-like protein
Translate Function Assignments


Context on contig NZ_GG657715 from base 769396 to 783583 (14188 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2535 769396 770139 744 +           Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  
2546 779594 779848 255 + 6         hypothetical protein  
2547 779838 780620 783 + -11         Bacteriocin-like protein  
2548 780814 781500 687 + 193         hypothetical protein  
2549 781490 783583 2094 + -11     1: 1   DNA topoisomerase III (EC 5.99.1.2)  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2541 TrsE-like protein
MWPDGICKVADGRYTKTIQFQDINYQLSQNEDKTAIFEGWCDFLNYFDSSIRFQLSFLNL
AASQETFANSIAIPAQGDDFDPIRVEYTQMLQNQLARGNNGLIKTKYLTFSIEADSIRSA
KPRLERIETDVLNNFKRLGVAAEVLDGKARLAQLHAIFHMDEQAPFQFEWDWLAPSGLST
KDFIAPSGFEFRTGKQFRMGKKYGAVSFVQILAPELNDRMLADFLDMESSLIVNLHIQSV
DQVKAIKTVKRKITDLDRSKIEEQKKAVRAGYDMDIIPSDLATYGAEAKKLLQDLQSRNE
RMFLVTFLVLNTADNPRQLGNNIFQASSIAQKYNCQLTRLDFQQEEGLMSSLPLGLNQVE
IQRGLTTSSTAIFVPFTTQELFQNGKEALYYGINALSNNLIMVDRKLLKNPNGLILGTPG
SGKSFSAKREIANCFLLTSDDVIICDPEAEYAPLVERLHGQVIKISPTSTNYINPMDLNL
DYSDDESPLSLKSDFILSLCELIVGGKDGLQPVQKTIIDRCVRLVYQDYLNDPRPENMPI
LEDLYDLLRAQDEKEAQYIATALEIYVTGSLNVFNHRSNVDINNRIVCYDIKELGKQLKK
IGMLVVQDQVWNRVTINRAARKSTRYYIDEMHLLLKEEQTAAYTVEIWKRFRKWGGIPTG
ITQNVKDLLSSREVENIFENSDFVYMLNQAGGDRQILARQLGISPHQLSYVTHSGEGEGL
LFYGSTILPFVDHFPKNTELYRIMTTKPQEMKEADGR

MD5 = b1e5b8cc3b43e121bcc55b697e84268a


  DNA Sequence

>fig|411471.5.peg.2541 TrsE-like protein
atgtggccggacggcatctgcaaggtggcggatggccgctacaccaagaccatccagttc
caggacatcaactaccagctcagccagaacgaggacaagaccgccatcttcgagggatgg
tgtgattttctcaactattttgacagctccatccgtttccagctgtcctttttgaacctg
gcggcgtcccaggagaccttcgccaacagcatcgccattccggcccagggggatgatttt
gaccccatccgggtggagtacacgcagatgctgcaaaatcagctggcgcggggcaacaac
ggcctcatcaagaccaagtacctgaccttttccatcgaggccgacagcatccgctccgcc
aagccccgtctggagcgcatcgagaccgatgtgctgaacaactttaagcggttgggcgtg
gccgccgaggttctggacggcaaagcccggctggcccagcttcacgccatcttccacatg
gacgagcaggcgcccttccagttcgagtgggactggctggctcccagcggcctttccacc
aaggactttatcgcgccgtccggcttcgagttccgtaccggcaagcagttccgcatggga
aagaagtacggggccgtcagcttcgtgcagattctggccccggagctgaatgaccgtatg
ctggcggactttctcgatatggaaagttccctcattgtgaatctgcacatccagtcggtg
gatcaggtgaaggccatcaagacggtaaagcggaaaatcaccgacctggaccgcagcaag
atcgaggaacagaaaaaggccgtccgcgccgggtatgacatggacatcatcccctccgac
cttgccacctacggggccgaggccaagaagctgttgcaggacctgcaaagccgcaacgag
cggatgttcctggtgacgttcctggtgctgaacacggcggacaatccccgccagctgggc
aacaacatcttccaggccagctccatcgcgcaaaagtacaactgccagctgacccggctg
gacttccagcaggaggaaggcttgatgtcctctctgccgctggggctgaaccaggtggaa
attcagcgggggctgactaccagctccaccgccatcttcgtgccgttcacgacccaggag
ctttttcagaacggcaaggaggcgctgtactacggcatcaacgccctgtccaacaacctc
atcatggtggaccgcaaactgctgaaaaaccccaacggcctgattctgggtacgccgggc
agcggcaaatccttcagcgccaagcgcgagatcgccaactgcttcctgctgacttcggat
gatgtcatcatctgcgacccggaggccgagtacgcgccgctggtggagcgcctgcacggg
caggtcatcaagatttcgcccacctccaccaactacatcaacccgatggacctgaacctg
gactattcggacgatgaaagcccgctgtcgctgaaatccgactttatcctgtcgctgtgt
gaactgattgtgggcggcaaggacggattgcagccggtgcagaaaaccatcattgaccgc
tgtgtgcggctggtgtatcaggactacctcaacgatccgcgcccggagaatatgcccatt
ctggaggatttgtacgacctgctgcgggcgcaggatgagaaagaggcgcagtacatcgca
acggcgctggaaatctacgtcaccggctccctcaacgtgttcaaccaccgcagcaacgtg
gacatcaacaaccgcattgtctgctacgacatcaaggagctgggcaagcagctgaaaaag
atcgggatgctggtggtccaggaccaggtgtggaaccgcgtcaccatcaaccgggccgcc
cgcaagtctacccgctactacatcgacgagatgcacctgctcttgaaagaggaacagact
gccgcctacacggtggagatttggaagcggttccgaaagtggggcggcattcccacgggc
atcacccagaacgtgaaggacctgctttcttcccgcgaggtggagaacatctttgaaaac
tccgacttcgtgtatatgctcaaccaggcgggcggtgaccggcagattttggcccggcag
ctgggtatttccccgcaccagctgtcctatgtgacccactccggcgagggcgaggggctg
ctgttctacggctccaccatcctgccctttgtggaccacttccccaagaataccgaactg
tatcgcattatgacgaccaaaccccaggaaatgaaggaggctgatggacgatga


  DNA with Flanking Sequence

>fig|411471.5.peg.2541 TrsE-like protein
caaagacctgacgaaagtcaaaaccaaggtcgcattcaacttaaccaaaaggcagcttgt
ctgcttcggctgcggggcgctcatcggcgtgccgcttttctttttgctccgggggcctgc
tggcaacagcgtggcggccatgtgcatgatgctcgtcatgctgcccttcttcatgctggc
gatgtatgaaaaacacggccagcccctggaaaagatcatcggcaacatcctcaaggtggc
cgtcatccggcccaagcagcgcccctaccgcaccaacaacttctatgccgtgttggagcg
gcaggcaaatctcgacaaggaggtgtatgacattgttcgcggcaaagacaaagcggcagg
ccgaaccggcagagccgcagaccaaaccccggcgtaagctgacccgcgccgaacgcaaac
agatcgaggcagcgattgcccgcgctaaccgcacggacaaaaaagagctgtccgcccagg
acagcatcccctatgagcggatgtggccggacggcatctgcaaggtggcggatggccgct
acaccaagaccatccagttccaggacatcaactaccagctcagccagaacgaggacaaga
ccgccatcttcgagggatggtgtgattttctcaactattttgacagctccatccgtttcc
agctgtcctttttgaacctggcggcgtcccaggagaccttcgccaacagcatcgccattc
cggcccagggggatgattttgaccccatccgggtggagtacacgcagatgctgcaaaatc
agctggcgcggggcaacaacggcctcatcaagaccaagtacctgaccttttccatcgagg
ccgacagcatccgctccgccaagccccgtctggagcgcatcgagaccgatgtgctgaaca
actttaagcggttgggcgtggccgccgaggttctggacggcaaagcccggctggcccagc
ttcacgccatcttccacatggacgagcaggcgcccttccagttcgagtgggactggctgg
ctcccagcggcctttccaccaaggactttatcgcgccgtccggcttcgagttccgtaccg
gcaagcagttccgcatgggaaagaagtacggggccgtcagcttcgtgcagattctggccc
cggagctgaatgaccgtatgctggcggactttctcgatatggaaagttccctcattgtga
atctgcacatccagtcggtggatcaggtgaaggccatcaagacggtaaagcggaaaatca
ccgacctggaccgcagcaagatcgaggaacagaaaaaggccgtccgcgccgggtatgaca
tggacatcatcccctccgaccttgccacctacggggccgaggccaagaagctgttgcagg
acctgcaaagccgcaacgagcggatgttcctggtgacgttcctggtgctgaacacggcgg
acaatccccgccagctgggcaacaacatcttccaggccagctccatcgcgcaaaagtaca
actgccagctgacccggctggacttccagcaggaggaaggcttgatgtcctctctgccgc
tggggctgaaccaggtggaaattcagcgggggctgactaccagctccaccgccatcttcg
tgccgttcacgacccaggagctttttcagaacggcaaggaggcgctgtactacggcatca
acgccctgtccaacaacctcatcatggtggaccgcaaactgctgaaaaaccccaacggcc
tgattctgggtacgccgggcagcggcaaatccttcagcgccaagcgcgagatcgccaact
gcttcctgctgacttcggatgatgtcatcatctgcgacccggaggccgagtacgcgccgc
tggtggagcgcctgcacgggcaggtcatcaagatttcgcccacctccaccaactacatca
acccgatggacctgaacctggactattcggacgatgaaagcccgctgtcgctgaaatccg
actttatcctgtcgctgtgtgaactgattgtgggcggcaaggacggattgcagccggtgc
agaaaaccatcattgaccgctgtgtgcggctggtgtatcaggactacctcaacgatccgc
gcccggagaatatgcccattctggaggatttgtacgacctgctgcgggcgcaggatgaga
aagaggcgcagtacatcgcaacggcgctggaaatctacgtcaccggctccctcaacgtgt
tcaaccaccgcagcaacgtggacatcaacaaccgcattgtctgctacgacatcaaggagc
tgggcaagcagctgaaaaagatcgggatgctggtggtccaggaccaggtgtggaaccgcg
tcaccatcaaccgggccgcccgcaagtctacccgctactacatcgacgagatgcacctgc
tcttgaaagaggaacagactgccgcctacacggtggagatttggaagcggttccgaaagt
ggggcggcattcccacgggcatcacccagaacgtgaaggacctgctttcttcccgcgagg
tggagaacatctttgaaaactccgacttcgtgtatatgctcaaccaggcgggcggtgacc
ggcagattttggcccggcagctgggtatttccccgcaccagctgtcctatgtgacccact
ccggcgagggcgaggggctgctgttctacggctccaccatcctgccctttgtggaccact
tccccaagaataccgaactgtatcgcattatgacgaccaaaccccaggaaatgaaggagg
ctgatggacgatgaaacccgaaattctgcataacgaccacatgatgtttctggaccgggc
gctggaaacccagcgcaccgcgctcctgacggcgatggcggacgccgtttccgagtgccg
cacggcggcggatcaggccgctgaactgaccgagaccggcgagaccggcctgctgcggct
ggtggagattctgtgcgccgccaaggtccagcgcgggcaggccggtgagactgtgctgga
gggcaccgaggtccagattttggccgacgtagtggcccagctctacgcctgcctgaccga
gtgccgcttcgtgggtccgctggggctggcggcctatgcggagctttccagcatggcggc
ctccctcatgctgggggaatggtttgattaaggaaccgcgcctgcgcttcacggaggaag
aacgggcggacccggcgctggaaaagcccatccgcaaggcggagaaggccgccgtcaaag
cggacaaggcgcaggcaaaaatcccgaaaaagca


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

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