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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2540: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: FIG00516512: hypothetical protein
Translate Function Assignments


Context on contig NZ_GG657715 from base 768478 to 779587 (11110 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
2534 768478 769356 879 +           hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  
2545 779033 779587 555 + 3         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2540 FIG00516512: hypothetical protein
MAYVPVPKDLTKVKTKVAFNLTKRQLVCFGCGALIGVPLFFLLRGPAGNSVAAMCMMLVM
LPFFMLAMYEKHGQPLEKIIGNILKVAVIRPKQRPYRTNNFYAVLERQANLDKEVYDIVR
GKDKAAGRTGRAADQTPA

MD5 = bd2e80684a7311e7a8fdf59295704ec6


  DNA Sequence

>fig|411471.5.peg.2540 FIG00516512: hypothetical protein
atggcttatgtacccgtacccaaagacctgacgaaagtcaaaaccaaggtcgcattcaac
ttaaccaaaaggcagcttgtctgcttcggctgcggggcgctcatcggcgtgccgcttttc
tttttgctccgggggcctgctggcaacagcgtggcggccatgtgcatgatgctcgtcatg
ctgcccttcttcatgctggcgatgtatgaaaaacacggccagcccctggaaaagatcatc
ggcaacatcctcaaggtggccgtcatccggcccaagcagcgcccctaccgcaccaacaac
ttctatgccgtgttggagcggcaggcaaatctcgacaaggaggtgtatgacattgttcgc
ggcaaagacaaagcggcaggccgaaccggcagagccgcagaccaaaccccggcgtaa


  DNA with Flanking Sequence

>fig|411471.5.peg.2540 FIG00516512: hypothetical protein
ggcccaagcgtccggcatcatcggctcggacgcttccatcgacatctccgccgtcatgac
cgatatggagtcccggctgatggatatggacctggggccgctgttcggcctgtggttcca
gtcgctctttatcggcattaccatgtgggcgctgtatatctgcatttttatcgtgattta
tggccgtatgatcgaaatttacctggtcacatcggtggcccccatcccaatggcgaccat
gatgggcaaggaatggggcggcatgggccagaactacttgcgcagcctgctggccctggg
cttccaggcgtttttgattatcgtctgtgtggcgatctacgccgtactggtgcagaacat
cgccaccgaggaggacatcatcatggcgatttggagctgcgtgggctataccgtgctgct
gtgcttcacactgttcaaaaccggcagtctcgcgaaagcagtgtttcaggcgcactgagc
caggaaggaggaaacgcaaaatggcttatgtacccgtacccaaagacctgacgaaagtca
aaaccaaggtcgcattcaacttaaccaaaaggcagcttgtctgcttcggctgcggggcgc
tcatcggcgtgccgcttttctttttgctccgggggcctgctggcaacagcgtggcggcca
tgtgcatgatgctcgtcatgctgcccttcttcatgctggcgatgtatgaaaaacacggcc
agcccctggaaaagatcatcggcaacatcctcaaggtggccgtcatccggcccaagcagc
gcccctaccgcaccaacaacttctatgccgtgttggagcggcaggcaaatctcgacaagg
aggtgtatgacattgttcgcggcaaagacaaagcggcaggccgaaccggcagagccgcag
accaaaccccggcgtaagctgacccgcgccgaacgcaaacagatcgaggcagcgattgcc
cgcgctaaccgcacggacaaaaaagagctgtccgcccaggacagcatcccctatgagcgg
atgtggccggacggcatctgcaaggtggcggatggccgctacaccaagaccatccagttc
caggacatcaactaccagctcagccagaacgaggacaagaccgccatcttcgagggatgg
tgtgattttctcaactattttgacagctccatccgtttccagctgtcctttttgaacctg
gcggcgtcccaggagaccttcgccaacagcatcgccattccggcccagggggatgatttt
gaccccatccgggtggagtacacgcagatgctgcaaaatcagctggcgcggggcaacaac
ggcctcatcaagaccaagtacctgaccttttccatcgaggccgacagcatccgctccgcc
aagccccgtctggagcgcatcgagaccgatgtgctga


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.3276 Subdoligranulum variabile DSM 15176 FIG   FIG00516512: hypothetical protein
gb|EEG44221.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02998
gi|225033975 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02998
gi|225566645 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02998
ref|ZP_03776452.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02998
tr|C0CFI9 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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