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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|411471.5.peg.2539: Subdoligranulum variabile DSM 15176

This feature in The SEED Viewer

NCBI Taxonomy Id: 411471

Current Assignment: Tn5252, Orf23
Translate Function Assignments



Context on contig NZ_GG657715 from base 767919 to 779029 (11111 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
2532 767919 768197 279 +           hypothetical protein  
2533 768288 768413 126 + 90         hypothetical protein  
2534 768478 769356 879 + 64         hypothetical protein  
2535 769396 770139 744 + 39         Phage antirepressor protein  
2536 770226 770726 501 + 86         FIG00515953: hypothetical protein  
2537 770723 772552 1830 + -4         TrsK-like protein  
2538 772767 772985 219 + 214         FIG00529559: hypothetical protein  
2539 773056 773925 870 + 70         Tn5252, Orf23  
2540 773948 774364 417 + 22         FIG00516512: hypothetical protein  
2541 774468 776741 2274 + 103         TrsE-like protein  
2542 776738 777118 381 + -4         hypothetical protein  
2543 777111 778844 1734 + -8         NLP/P60 family protein  
2544 779029 778910 120 - 65         hypothetical protein  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|411471.5.peg.2539 Tn5252, Orf23
MDFLLDALTNWLKEMLVGGIMGNLTGMFDSVNQQVADISVQVGQTPQGWNGDIFNMIQSL
SNSIMVPIAGVILAIVMTLELIQMITDRNNLHDVDTWMIFKWVFKSAAVILLVTNTWNLV
MGVFDMAQSVVAQASGIIGSDASIDISAVMTDMESRLMDMDLGPLFGLWFQSLFIGITMW
ALYICIFIVIYGRMIEIYLVTSVAPIPMATMMGKEWGGMGQNYLRSLLALGFQAFLIIVC
VAIYAVLVQNIATEEDIIMAIWSCVGYTVLLCFTLFKTGSLAKAVFQAH

MD5 = a1061b7e3cbd7fd4bfe932b753e1223b


  DNA Sequence

>fig|411471.5.peg.2539 Tn5252, Orf23
atggatttcttattggatgccctgaccaactggctgaaggaaatgctggtgggcggcatc
atgggaaacttaacggggatgttcgacagcgtgaaccagcaggtcgcggatatatccgta
caggtgggccagaccccgcagggctggaacggcgacattttcaacatgatccagagcctc
tccaactccatcatggtgccgattgcaggcgtgatcctggccatcgtgatgacgctggag
ctgatccagatgattaccgaccgcaacaacctgcatgatgtggacacctggatgatcttc
aaatgggtgttcaaatccgccgccgtgattttgctggtcaccaacacctggaacctcgtc
atgggcgtgttcgacatggcccaaagcgtggtggcccaagcgtccggcatcatcggctcg
gacgcttccatcgacatctccgccgtcatgaccgatatggagtcccggctgatggatatg
gacctggggccgctgttcggcctgtggttccagtcgctctttatcggcattaccatgtgg
gcgctgtatatctgcatttttatcgtgatttatggccgtatgatcgaaatttacctggtc
acatcggtggcccccatcccaatggcgaccatgatgggcaaggaatggggcggcatgggc
cagaactacttgcgcagcctgctggccctgggcttccaggcgtttttgattatcgtctgt
gtggcgatctacgccgtactggtgcagaacatcgccaccgaggaggacatcatcatggcg
atttggagctgcgtgggctataccgtgctgctgtgcttcacactgttcaaaaccggcagt
ctcgcgaaagcagtgtttcaggcgcactga


  DNA with Flanking Sequence

>fig|411471.5.peg.2539 Tn5252, Orf23
tccgctgtgaaaggaggggtcctatctatccgccacaaccgccccgctggggccatcggc
gtacaaagcggacgatctctatcaaaataatgaaaaaggaggaaggccggaatcagccag
cccggaaatcgggcggcgattgtccggcttttgtatgcctatgaaccataactaatcaat
ctttttcaaatgattccggccaactttatttatggaatttttcaatcaggcaatcaccgt
tctccagaccctcgttatcgccctcggtgccggtctcggcgtgtggggcgtcatcaacct
gctggaaggttacggcaacgacaaccccggtgccaaaagccagggcatgaaacagctcat
ggccggcgcgggtgtcgctatcgtcggcatggtgctggtgcccctgctgtccggcctgtt
caccgtctgatcgttacccgctgaaatcctcgccccctcccgctgtgcacgggaggggca
gaaaggaggtttgacaccgtatggatttcttattggatgccctgaccaactggctgaagg
aaatgctggtgggcggcatcatgggaaacttaacggggatgttcgacagcgtgaaccagc
aggtcgcggatatatccgtacaggtgggccagaccccgcagggctggaacggcgacattt
tcaacatgatccagagcctctccaactccatcatggtgccgattgcaggcgtgatcctgg
ccatcgtgatgacgctggagctgatccagatgattaccgaccgcaacaacctgcatgatg
tggacacctggatgatcttcaaatgggtgttcaaatccgccgccgtgattttgctggtca
ccaacacctggaacctcgtcatgggcgtgttcgacatggcccaaagcgtggtggcccaag
cgtccggcatcatcggctcggacgcttccatcgacatctccgccgtcatgaccgatatgg
agtcccggctgatggatatggacctggggccgctgttcggcctgtggttccagtcgctct
ttatcggcattaccatgtgggcgctgtatatctgcatttttatcgtgatttatggccgta
tgatcgaaatttacctggtcacatcggtggcccccatcccaatggcgaccatgatgggca
aggaatggggcggcatgggccagaactacttgcgcagcctgctggccctgggcttccagg
cgtttttgattatcgtctgtgtggcgatctacgccgtactggtgcagaacatcgccaccg
aggaggacatcatcatggcgatttggagctgcgtgggctataccgtgctgctgtgcttca
cactgttcaaaaccggcagtctcgcgaaagcagtgtttcaggcgcactgagccaggaagg
aggaaacgcaaaatggcttatgtacccgtacccaaagacctgacgaaagtcaaaaccaag
gtcgcattcaacttaaccaaaaggcagcttgtctgcttcggctgcggggcgctcatcggc
gtgccgcttttctttttgctccgggggcctgctggcaacagcgtggcggccatgtgcatg
atgctcgtcatgctgcccttcttcatgctggcgatgtatgaaaaacacggccagcccctg
gaaaagatcatcggcaacatcctcaaggtggccgtcatccggcccaagcagcgcccctac
cgcaccaacaacttctatgccgtgttggagcggcaggcaaatctcgacaaggaggtgtat
gacattgttcgcggcaaagacaaagcggcaggccgaaccggcagagccgcagaccaaacc
ccggcgtaagctgacccgcgccgaacgcaaacagatcgaggcagcgattgcccgcgctaa
ccgcacggac


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|411471.5.peg.3275 Subdoligranulum variabile DSM 15176 FIG   Tn5252, Orf23
gb|EEG44220.1 Subdoligranulum variabile DSM 15176     hypothetical protein SUBVAR_02997
gi|225033974 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02997
gi|225566644 Subdoligranulum variabile DSM 15176 NCBI   hypothetical protein SUBVAR_02997
ref|ZP_03776451.1 Subdoligranulum variabile DSM 15176 RefSeq   hypothetical protein SUBVAR_02997
tr|C0CFI8 Subdoligranulum variabile DSM 15176 TrEMBL   Putative uncharacterized protein


  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

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