| Tool |
Description |
| General Tools |
| Psi-Blast |
NCBI's psi-blast is used to locate distant similarities |
| Transmembrane Predictions |
| TMpred |
Tool for Predicting Transmembrane regions |
| TMHMM |
Prediction of transmembrane helices in proteins |
| Protein Signals for Gram negative bacteria |
| Gram negative PSORT |
Prediction of protein localization sites |
| Gram negative SignalP |
Predicts the presence and location of signal peptide cleavage sites |
| Protein Signals for Gram positive bacteria |
| Gram positive PSORT |
Prediction of protein localization sites |
| Gram positive SignalP |
Predicts the presence and location of signal peptide cleavage sites |
| Other useful tools |
| LipoP |
Prediction of lipoproteins and signal peptides in Gram negative bacteria |
| Radar |
Rapid Automatic Detection and Alignment of Repeats in protein sequences |
| PPSearch |
Search for protein motifs against all patterns stored in the PROSITE pattern database |
| Gram negative CELLO |
Subcellular localization predictor at National Chiao Tung University |
| Gram positive CELLO |
Subcellular localization predictor at National Chiao Tung University |
| ProDom |
A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases |
| PDB |
An Information Portal to Biological Macromolecular Structures |
| For Specific Organisms |
| RNAFold |
The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. |
